Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G089800 Manihot esculenta HOM05D003429 ORTHO05D003873 1.4e-27 125.6 63 100.0
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 7.1e-24 113.2 63 90.5
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.2e-23 112.5 63 88.9
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 1.2e-23 112.5 63 88.9
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 1.2e-23 112.5 63 88.9
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 6.0e-23 110.2 63 84.1
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 6.0e-23 110.2 63 85.7
QL04p022451 Quercus lobata HOM05D003429 ORTHO05D003873 6.0e-23 110.2 62 85.5
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 6.0e-23 110.2 63 85.7
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 1.0e-22 109.4 60 90.0
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 1.3e-22 109.0 63 84.1
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 1.8e-22 108.6 60 88.3
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 1.8e-22 108.6 63 84.1
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 2.3e-22 108.2 63 84.1
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 2.3e-22 108.2 63 87.3
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 2.3e-22 108.2 63 82.5
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 2.3e-22 108.2 63 82.5
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 2.3e-22 108.2 63 82.5
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 3.0e-22 107.8 63 82.5
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 3.9e-22 107.5 63 84.1
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 6.7e-22 106.7 63 82.5
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 1.5e-21 105.5 63 77.8
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 1.5e-21 105.5 63 79.4
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 1.5e-21 105.5 63 79.4
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 1.5e-21 105.5 63 82.5
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 1.9e-21 105.1 60 81.7
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 3.3e-21 104.4 63 79.4
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 3.3e-21 104.4 59 83.1
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 3.3e-21 104.4 60 86.7
Oeu008545.1 Olea europaea HOM05D003429 ORTHO05D003873 4.3e-21 104.0 63 81.0
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 4.3e-21 104.0 63 81.0
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 5.7e-21 103.6 63 79.4
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 5.7e-21 103.6 63 81.0
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 5.7e-21 103.6 63 79.4
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 7.4e-21 103.2 60 81.7
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 7.4e-21 103.2 60 83.3
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 9.6e-21 102.8 60 81.7
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 9.6e-21 102.8 63 79.4
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.3e-20 102.4 63 77.8
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 1.3e-20 102.4 63 79.4
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.3e-20 102.4 63 79.4
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 1.3e-20 102.4 60 81.7
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 1.6e-20 102.1 63 81.0
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.1e-20 101.7 63 76.2
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.1e-20 101.7 60 81.7
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.1e-20 101.7 60 81.7
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.1e-20 101.7 60 81.7
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 2.1e-20 101.7 60 81.7
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.8e-20 101.3 63 76.2
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 3.7e-20 100.9 63 76.2
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 4.8e-20 100.5 62 75.8
Ca_15294_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 4.8e-20 100.5 60 80.0
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 4.8e-20 100.5 63 77.8
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 4.8e-20 100.5 63 77.8
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 4.8e-20 100.5 63 77.8
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 4.8e-20 100.5 63 77.8
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 6.3e-20 100.1 63 76.2
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 6.3e-20 100.1 63 76.2
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 6.3e-20 100.1 63 76.2
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 1.1e-19 99.4 63 77.8
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 1.1e-19 99.4 63 74.6
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 1.1e-19 99.4 58 81.0
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.8e-19 98.6 60 78.3
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.8e-19 98.6 63 73.0
HPP92_028715 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.8e-19 98.6 63 73.0
CARHR206820 Cardamine hirsuta HOM05D003429 ORTHO05D003873 3.1e-19 97.8 62 72.6
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 5.3e-19 97.1 60 75.0
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 5.3e-19 97.1 58 79.3
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 5.3e-19 97.1 63 73.0
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 6.9e-19 96.7 58 77.6
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 6.9e-19 96.7 60 75.0
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 1.2e-18 95.9 62 77.4
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 1.5e-18 95.5 60 73.3
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 2.0e-18 95.1 62 72.6
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 2.0e-18 95.1 63 74.6
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 2.6e-18 94.7 60 78.3
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 2.6e-18 94.7 60 78.3
Manes.03G089519 Manihot esculenta HOM05D003429 ORTHO05D003873 4.5e-18 94.0 51 88.2
Manes.13G093344 Manihot esculenta HOM05D003429 ORTHO05D003873 4.5e-18 94.0 51 88.2
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 5.9e-18 93.6 69 69.6
Nitab4.5_0000211g0050 Nicotiana tabacum HOM05D003429 ORTHO05D003873 7.6e-18 93.2 63 69.8
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 7.6e-18 93.2 63 69.8
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 7.6e-18 93.2 60 75.0
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 7.6e-18 93.2 60 75.0
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 7.6e-18 93.2 63 68.3
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 7.6e-18 93.2 63 68.3
vmacro07757 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 7.6e-18 93.2 63 68.3
GSVIVG01021243001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.3e-17 92.4 63 74.6
Nitab4.5_0002094g0070 Nicotiana tabacum HOM05D003429 ORTHO05D003873 1.7e-17 92.0 63 68.3
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.2e-17 91.7 63 68.3
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 2.9e-17 91.3 63 73.0
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 2.9e-17 91.3 67 68.7
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 2.9e-17 91.3 63 68.3
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 2.9e-17 91.3 63 68.3
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 5.0e-17 90.5 60 75.0
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 5.0e-17 90.5 60 75.0
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 5.0e-17 90.5 77 62.3
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 8.5e-17 89.7 60 68.3
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 8.5e-17 89.7 62 71.0
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.1e-16 89.4 63 66.7
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 2.5e-16 88.2 51 78.4
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 3.2e-16 87.8 60 68.3
BcaC06g32583 Brassica carinata HOM05D000478 ORTHO05D000345 7.2e-16 86.7 63 68.3
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 1.2e-15 85.9 94 52.1
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 1.6e-15 85.5 52 75.0
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 3.6e-15 84.3 70 65.7
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 6.1e-15 83.6 67 67.2
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 6.1e-15 83.6 63 66.7
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 1.0e-14 82.8 63 66.7
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 1.0e-14 82.8 61 63.9
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 1.0e-14 82.8 60 63.3
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 6.7e-14 80.1 53 71.7
Ca_29535_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 8.7e-14 79.7 60 63.3
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 8.7e-14 79.7 63 63.5
FAN10G3011 Fragaria x ananassa HOM05D003429 ORTHO05D003873 2.5e-13 78.2 47 76.6
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 2.5e-13 78.2 56 66.1
Os01g0278200 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 7.4e-13 76.6 46 73.9
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 1.3e-12 75.9 59 59.3
Psat6g086480 Pisum sativum HOM05D003429 ORTHO05D003873 2.8e-12 74.7 63 60.3
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 3.7e-12 74.3 60 56.7
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 4.8e-12 73.9 63 57.1
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 1.1e-11 72.8 60 58.3
Cre02.g141506 Chlamydomonas reinhardtii HOM05D003429 ORTHO05D003873 6.9e-11 70.1 57 54.4
AUR62018434 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.2e-10 69.3 63 55.6
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 1.2e-10 69.3 63 55.6
MCO13G155 Micromonas commoda HOM05D003429 ORTHO05D003873 1.5e-10 68.9 53 58.5
AUR62020999 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.0e-10 68.6 63 54.0
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 4.5e-10 67.4 69 49.3
Ah.04g150250 Amaranthus hybridus HOM05D003429 ORTHO05D003873 7.2e-08 60.1 59 55.9
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 3.6e-07 57.8 59 45.8


User provided reference genes

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