Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 1.9e-119 432.6 225 100.0
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 3.0e-64 249.2 194 68.6
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 3.5e-41 172.6 215 49.3
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 1.0e-40 171.0 215 47.9
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 6.7e-40 168.3 157 60.5
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 5.7e-39 165.2 164 56.7
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.1e-38 163.3 206 49.5
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 1.1e-37 161.0 160 57.5
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 4.1e-37 159.1 192 51.6
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 2.0e-36 156.8 198 52.0
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 7.6e-36 154.8 177 49.2
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.7e-35 153.7 194 46.9
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 1.7e-35 153.7 194 46.9
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 2.5e-34 149.8 163 54.6
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 3.3e-31 139.4 194 49.5
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.0e-27 127.9 208 39.4
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 1.2e-25 120.9 194 38.7
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 3.6e-25 119.4 197 38.6
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 6.1e-25 118.6 191 41.4
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 7.9e-25 118.2 207 37.7
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 7.9e-25 118.2 215 36.7
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.0e-24 117.9 154 42.2
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.1e-23 114.4 152 45.4
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 7.4e-23 111.7 199 37.2
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 1.3e-22 110.9 200 37.5
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.3e-22 110.9 199 36.7
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 2.2e-22 110.2 163 41.1
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 2.2e-22 110.2 184 40.2
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 3.7e-22 109.4 199 36.7
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 4.8e-22 109.0 199 36.7
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 4.8e-22 109.0 199 36.7
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 4.8e-22 109.0 206 38.3
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 4.8e-22 109.0 164 39.6
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 6.3e-22 108.6 190 37.4
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 8.2e-22 108.2 162 41.4
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 1.1e-21 107.8 237 37.1
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 1.1e-21 107.8 185 37.8
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 1.4e-21 107.5 193 36.3
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 1.4e-21 107.5 193 36.3
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 2.4e-21 106.7 196 36.2
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 2.4e-21 106.7 204 37.3
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 4.1e-21 105.9 206 35.9
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 6.9e-21 105.1 167 40.1
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 6.9e-21 105.1 159 40.9
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 9.1e-21 104.8 174 36.8
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 1.2e-20 104.4 198 36.9
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.2e-20 104.4 206 35.9
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 1.2e-20 104.4 192 36.5
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.2e-20 104.4 199 34.7
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 1.5e-20 104.0 164 40.2
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 2.0e-20 103.6 179 39.1
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 2.0e-20 103.6 199 36.7
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 2.0e-20 103.6 199 36.7
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 2.0e-20 103.6 199 36.7
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 2.0e-20 103.6 177 36.7
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.6e-20 103.2 207 34.8
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.6e-20 103.2 223 34.5
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 5.9e-20 102.1 198 32.8
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 5.9e-20 102.1 209 32.5
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 5.9e-20 102.1 197 35.0
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 7.7e-20 101.7 198 34.8
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 7.7e-20 101.7 211 36.0
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.3e-19 100.9 162 38.3
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.3e-19 100.9 162 38.3
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.2e-19 100.1 212 34.9
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 5.0e-19 99.0 155 38.7
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.0e-19 99.0 163 38.7
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 6.5e-19 98.6 163 41.1
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 6.5e-19 98.6 235 31.9
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 8.5e-19 98.2 207 35.7
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 8.5e-19 98.2 211 35.5
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 1.4e-18 97.4 206 35.0
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 1.9e-18 97.1 182 34.1
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.9e-18 97.1 202 34.7
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 1.9e-18 97.1 195 35.4
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 3.2e-18 96.3 157 37.6
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 7.2e-18 95.1 162 39.5
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 1.2e-17 94.4 163 36.8
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 2.1e-17 93.6 167 37.1
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 2.7e-17 93.2 201 34.3
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 3.6e-17 92.8 140 40.0
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 4.7e-17 92.4 162 38.9
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.1e-17 92.0 163 35.6
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 6.1e-17 92.0 187 35.3
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 1.0e-16 91.3 145 37.9
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.0e-16 91.3 163 38.0
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 2.3e-16 90.1 157 38.9
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 3.0e-16 89.7 167 35.3
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 3.0e-16 89.7 149 40.9
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 3.0e-16 89.7 162 35.2
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 5.1e-16 89.0 186 35.5
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.5e-15 87.4 160 34.4
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 2.6e-15 86.7 167 35.3
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 5.7e-15 85.5 162 39.5
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 5.7e-15 85.5 188 33.0
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.3e-14 84.3 163 35.6
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 1.3e-14 84.3 165 37.0
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 6.3e-14 82.0 222 30.2
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 8.2e-14 81.6 223 30.0
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 8.2e-14 81.6 255 27.1
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 1.4e-13 80.9 156 37.2
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 7.0e-13 78.6 161 37.3
Sabra19G0015300 Salix brachista HOM05D005305 ORTHO05D006394 9.1e-13 78.2 114 40.4
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 3.5e-12 76.3 146 37.0
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 4.5e-12 75.9 184 31.5
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.5e-12 75.9 161 36.0
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.7e-11 73.9 216 31.0
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.7e-11 73.9 216 31.0
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.7e-11 73.9 216 31.0
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.7e-11 73.9 216 31.0
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.7e-11 73.9 131 37.4
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 5.0e-11 72.4 163 36.8
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 1.5e-10 70.9 161 37.3
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 1.9e-10 70.5 160 35.0
Peaxi162Scf00025g00263 Petunia axillaris HOM05D005305 ORTHO05D006394 4.2e-10 69.3 132 36.4
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 5.5e-10 68.9 131 35.1
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 2.1e-09 67.0 101 40.6
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.7e-09 65.9 216 29.6
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 6.1e-09 65.5 185 30.8
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.1e-09 65.5 101 39.6
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 8.0e-09 65.1 115 38.3
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 8.0e-09 65.1 162 33.3
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.0e-08 63.2 112 34.8
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 4.0e-08 62.8 94 37.2
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.7e-08 62.0 112 32.1
Nitab4.5_0000507g0020 Nicotiana tabacum HOM05D010623 ORTHO05D012718 3.3e-07 59.7 145 30.3
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.2e-06 57.0 112 32.1
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 2.8e-06 56.6 178 34.8
Nn1g04620 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.8e-06 56.6 78 39.7
Nitab4.5_0006512g0040 Nicotiana tabacum HOM05D010623 ORTHO05D012718 3.7e-06 56.2 168 30.4
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 6.3e-06 55.5 128 34.4
BolC3t17090H Brassica oleracea HOM05D000430 ORTHO05D000305 6.3e-06 55.5 88 36.4
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 8.2e-06 55.1 128 32.8
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 8.2e-06 55.1 128 32.8
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 8.2e-06 55.1 98 36.7


User provided reference genes

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