Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.4e-44 182.6 90 100.0
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.4e-44 182.6 90 100.0
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 6.4e-34 147.1 75 96.0
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 5.2e-20 100.9 78 70.5
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 5.8e-19 97.4 78 62.8
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 1.3e-18 96.3 65 73.8
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 2.2e-18 95.5 76 67.1
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 4.9e-18 94.4 76 64.5
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.4e-17 92.8 73 67.1
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 5.4e-17 90.9 82 62.2
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 9.2e-17 90.1 79 59.5
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 2.1e-16 89.0 74 64.9
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 2.7e-16 88.6 80 60.0
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 3.5e-16 88.2 75 64.0
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 7.8e-16 87.0 87 54.0
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.3e-15 86.3 79 60.8
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 1.3e-15 86.3 78 61.5
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 1.7e-15 85.9 89 48.3
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 2.3e-15 85.5 74 63.5
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 2.3e-15 85.5 88 53.4
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 3.0e-15 85.1 57 71.9
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 3.0e-15 85.1 103 51.5
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 3.0e-15 85.1 79 57.0
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 3.9e-15 84.7 74 62.2
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 3.9e-15 84.7 79 58.2
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 5.1e-15 84.3 79 60.8
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 5.1e-15 84.3 77 61.0
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 5.1e-15 84.3 79 59.5
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 5.1e-15 84.3 73 61.6
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 6.6e-15 84.0 85 56.5
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 6.6e-15 84.0 91 52.7
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 8.7e-15 83.6 71 60.6
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 8.7e-15 83.6 50 72.0
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.9e-14 82.4 43 83.7
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 1.9e-14 82.4 92 51.1
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 2.5e-14 82.0 80 60.0
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 9.6e-14 80.1 83 56.6
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 9.6e-14 80.1 58 67.2
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.6e-13 79.3 55 65.5
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 2.8e-13 78.6 85 51.8
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 4.7e-13 77.8 78 53.8
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 1.1e-12 76.6 54 63.0
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 1.4e-12 76.3 93 50.5
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.8e-12 75.9 79 54.4
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 4.0e-12 74.7 69 49.3
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 9.0e-12 73.6 44 75.0
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 9.0e-12 73.6 44 75.0
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 9.0e-12 73.6 49 69.4
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 5.8e-11 70.9 85 49.4
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 7.6e-11 70.5 58 58.6
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 9.9e-11 70.1 85 48.2
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 9.9e-11 70.1 85 48.2
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 1.3e-10 69.7 53 58.5
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 2.2e-10 68.9 74 55.4
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 2.9e-10 68.6 53 52.8
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 1.4e-09 66.2 37 78.4
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 4.2e-09 64.7 65 55.4
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 4.2e-09 64.7 64 46.9
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 5.4e-09 64.3 90 42.2
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 5.4e-09 64.3 83 48.2
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 5.4e-09 64.3 68 48.5
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 9.3e-09 63.5 79 46.8
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 9.3e-09 63.5 67 49.3
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 1.0e-07 60.1 64 43.8
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 2.3e-07 58.9 79 43.0
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 2.3e-07 58.9 83 43.4
PGR102G0794 Punica granatum HOM05D008202 ORTHO05D010302 5.1e-07 57.8 77 46.8
Mapoly0004s0023 Marchantia polymorpha HOM05D039400 ORTHO05D034304 6.6e-07 57.4 47 55.3
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 1.1e-06 56.6 39 59.0
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 2.5e-06 55.5 39 56.4
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 9.6e-06 53.5 35 65.7
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 9.6e-06 53.5 35 65.7


User provided reference genes

Program Settings