Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 0.0e+00 1082.4 554 100.0
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.2e-268 929.5 553 83.7
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.8e-267 925.6 553 83.7
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 3.9e-267 924.5 554 83.4
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 5.7e-266 920.6 552 82.6
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-265 919.5 545 83.9
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 3.7e-265 917.9 554 83.0
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 4.1e-264 914.4 553 82.8
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.0e-263 912.1 552 83.2
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 3.4e-263 911.4 552 81.9
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 2.5e-261 905.2 553 83.7
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 5.5e-261 904.0 553 81.6
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 9.3e-261 903.3 565 80.4
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 9.3e-261 903.3 565 80.0
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.7e-257 892.5 539 82.2
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.2e-255 886.3 554 81.9
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 3.8e-254 881.3 557 79.0
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 5.0e-254 880.9 557 79.0
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.2e-253 878.2 558 78.7
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.9e-251 871.3 561 78.6
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 6.7e-251 870.5 514 83.9
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 6.3e-249 864.0 560 78.0
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 2.4e-248 862.1 560 77.7
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 7.0e-248 860.5 560 78.0
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 2.0e-247 859.0 513 83.8
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.7e-246 855.9 539 79.6
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-245 852.4 550 78.0
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 3.2e-245 851.7 553 80.3
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 5.5e-245 850.9 511 82.4
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 4.7e-244 847.8 511 82.0
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 8.0e-244 847.0 560 76.4
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 3.0e-243 845.1 558 75.6
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.9e-243 844.7 511 81.8
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.6e-242 842.0 511 81.6
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 3.3e-242 841.6 561 76.6
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 7.4e-242 840.5 516 81.2
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.7e-241 839.3 511 81.2
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 8.2e-241 837.0 516 80.6
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 2.4e-240 835.5 525 78.3
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 3.1e-240 835.1 481 84.6
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 7.0e-240 833.9 516 80.6
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 5.9e-239 830.9 515 80.8
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 7.7e-239 830.5 561 73.8
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 7.7e-239 830.5 560 74.6
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.0e-238 830.1 481 84.0
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 2.9e-238 828.6 541 76.5
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 6.5e-238 827.4 516 79.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.5e-237 826.2 546 76.7
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.9e-237 825.9 516 79.8
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 9.4e-237 823.5 536 76.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.7e-236 821.2 551 74.6
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 8.0e-236 820.5 561 72.9
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 8.0e-236 820.5 410 97.6
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 3.0e-235 818.5 555 75.9
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.2e-234 816.6 555 74.8
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.2e-234 816.6 555 75.0
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 7.5e-234 813.9 540 77.8
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 7.5e-234 813.9 540 77.0
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 7.5e-234 813.9 534 76.0
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.8e-233 811.2 556 74.5
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.8e-233 811.2 555 75.1
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 6.3e-233 810.8 554 74.2
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 8.2e-233 810.4 555 74.2
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 5.3e-232 807.7 556 74.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.6e-231 806.2 506 79.2
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.7e-230 802.7 552 72.6
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.7e-230 802.7 555 73.9
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.9e-229 799.3 564 71.3
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.9e-229 799.3 556 74.5
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 5.5e-229 797.7 555 73.9
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 9.4e-229 797.0 562 70.5
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.2e-228 796.6 549 73.6
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.6e-228 796.2 552 73.0
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 8.0e-228 793.9 522 78.7
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.4e-227 793.1 469 81.4
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 4.0e-227 791.6 555 73.2
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 4.0e-227 791.6 549 72.5
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 5.2e-227 791.2 526 74.0
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 6.8e-227 790.8 527 73.6
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 2.0e-226 789.3 518 76.1
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 3.4e-226 788.5 524 74.8
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 4.4e-226 788.1 553 72.2
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 9.8e-226 786.9 553 72.5
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.7e-225 785.0 553 71.8
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 6.3e-225 784.3 552 73.6
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 8.3e-225 783.9 553 71.8
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 8.3e-225 783.9 526 73.4
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.1e-224 783.5 540 72.8
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 5.4e-224 781.2 550 72.2
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 7.0e-224 780.8 557 72.9
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.7e-223 778.9 555 71.7
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.7e-222 776.2 641 64.3
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 2.3e-222 775.8 548 71.9
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.9e-221 772.7 547 71.7
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.6e-220 769.6 544 71.9
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 2.8e-220 768.8 480 79.6
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.8e-219 766.1 547 71.3
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 4.0e-219 765.0 535 72.5
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 6.8e-219 764.2 553 70.9
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 8.9e-219 763.8 560 69.8
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.4e-218 761.9 561 69.0
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 7.5e-218 760.8 548 71.2
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.5e-218 760.8 529 73.2
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 8.3e-217 757.3 453 81.9
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 5.4e-216 754.6 542 72.5
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.2e-215 753.4 571 68.3
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.7e-215 752.3 452 81.2
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.9e-215 751.1 592 67.1
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.9e-213 746.1 551 68.6
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.9e-213 746.1 551 68.6
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.5e-213 745.7 523 71.7
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.8e-211 739.6 548 70.4
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 4.0e-211 738.4 552 70.5
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 2.0e-210 736.1 541 69.7
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 1.9e-208 729.6 520 72.5
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 8.9e-203 710.7 503 71.6
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 7.3e-197 691.0 402 81.1
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 3.6e-196 688.7 537 69.5
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 4.4e-194 681.8 541 64.7
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.7e-193 679.9 569 64.3
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 9.9e-186 654.1 564 60.1
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.2e-185 652.9 568 60.7
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 4.4e-178 628.6 480 66.2
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.3e-174 617.1 530 62.1
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 3.4e-170 602.4 538 60.2
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.9e-168 596.7 435 71.7
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 5.6e-165 585.1 502 60.6
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.3e-163 578.6 555 59.1
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 2.7e-159 566.2 376 78.5
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 4.6e-159 565.5 534 56.9
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 7.4e-157 558.1 546 55.3
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 3.9e-150 535.8 429 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 3.6e-143 512.7 568 51.1
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 6.1e-143 511.9 343 76.1
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.1e-139 501.1 467 57.4
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.2e-136 489.2 578 47.9
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 1.8e-131 473.8 375 66.7
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.4e-131 473.4 530 50.0
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 7.2e-128 461.8 390 65.1
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.1e-104 384.8 306 58.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 6.8e-102 375.6 529 40.6
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 3.2e-99 366.7 506 43.9
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 7.0e-99 365.5 325 63.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 5.1e-73 279.6 157 90.4
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 8.1e-71 272.3 164 95.1
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 3.2e-67 260.4 244 59.8
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.9e-59 234.6 459 31.8
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 4.6e-58 229.9 226 57.5
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 3.0e-49 200.7 415 32.8
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 5.1e-49 199.9 153 73.2
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.5e-48 198.4 465 30.8
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 3.7e-47 193.7 111 88.3
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 9.0e-46 189.1 91 96.7
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 7.6e-45 186.0 390 34.9
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.9e-43 181.4 128 70.3
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.6e-42 176.8 118 73.7
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.1e-40 172.2 408 31.6
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 2.4e-38 164.5 169 52.1
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 6.9e-38 162.9 155 58.1
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-24 119.0 86 64.0
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.5e-19 101.3 160 40.0
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.8e-14 85.1 40 97.5
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 9.1e-14 82.8 40 92.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 2.9e-12 77.8 48 72.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 4.7e-10 70.5 37 83.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 2.3e-09 68.2 33 84.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 3.3e-08 64.3 100 40.0
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 3.7e-07 60.8 351 22.8
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 4.8e-07 60.5 351 22.8
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 4.8e-07 60.5 351 22.8
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 8.2e-07 59.7 351 22.8
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 8.2e-07 59.7 351 22.8
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 1.8e-06 58.5 57 56.1
PGR031G3438 Punica granatum HOM05D002999 ORTHO05D003137 2.4e-06 58.2 193 23.8
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 3.1e-06 57.8 351 22.2


User provided reference genes

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