Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G077768 Manihot esculenta HOM05D000429 ORTHO05D000352 2.9e-58 228.4 119 100.0
Manes.18G146801 Manihot esculenta HOM05D000429 ORTHO05D000352 8.7e-39 163.7 119 75.6
Manes.16G049870 Manihot esculenta HOM05D000429 ORTHO05D000352 1.3e-37 159.8 118 73.7
Manes.07G030402 Manihot esculenta HOM05D000429 ORTHO05D000352 4.5e-35 151.4 102 77.5
Manes.01G082850 Manihot esculenta HOM05D000429 ORTHO05D000352 2.2e-34 149.1 119 67.2
Manes.04G060101 Manihot esculenta HOM05D000429 ORTHO05D000352 1.1e-33 146.7 119 65.5
Manes.15G107550 Manihot esculenta HOM05D000429 ORTHO05D000352 7.1e-33 144.1 112 64.3
Manes.18G145610 Manihot esculenta HOM05D000429 ORTHO05D000352 7.1e-33 144.1 112 66.1
Manes.13G092290 Manihot esculenta HOM05D000429 ORTHO05D000352 1.2e-32 143.3 117 64.1
Manes.13G092480 Manihot esculenta HOM05D000429 ORTHO05D000352 1.2e-32 143.3 117 65.0
Manes.18G141017 Manihot esculenta HOM05D000429 ORTHO05D000352 1.0e-31 140.2 118 64.4
Manes.05G115092 Manihot esculenta HOM05D000429 ORTHO05D000352 1.2e-27 126.7 101 65.3
Manes.11G076151 Manihot esculenta HOM05D000429 ORTHO05D000352 2.0e-27 125.9 118 58.5
Manes.09G078108 Manihot esculenta HOM05D000429 ORTHO05D000352 1.9e-22 109.4 115 48.7
Manes.16G047550 Manihot esculenta HOM05D000429 ORTHO05D000352 1.1e-17 93.6 100 53.0
Manes.16G059350 Manihot esculenta HOM05D000429 ORTHO05D000352 1.8e-15 86.3 67 67.2
Manes.10G105750 Manihot esculenta HOM05D000429 ORTHO05D000352 4.5e-11 71.6 81 45.7
Manes.05G115333 Manihot esculenta HOM05D000429 ORTHO05D000352 2.2e-10 69.3 79 54.4
Potri.006G157801 Populus trichocarpa HOM05D000429 ORTHO05D000352 3.2e-09 65.5 118 32.2
CSS0008580 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 9.4e-09 63.9 118 33.9
CSS0029853 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.6e-08 63.2 120 34.2
CSS0043404 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.6e-08 63.2 120 34.2
Manes.16G015332 Manihot esculenta HOM05D000429 ORTHO05D000352 1.6e-08 63.2 115 33.9
Manes.02G203175 Manihot esculenta HOM05D000429 ORTHO05D000352 2.1e-08 62.8 115 34.8
Os03g0439900 Oryza sativa ssp. japonica HOM05D000429 ORTHO05D000352 2.1e-08 62.8 115 33.9
CSS0021795 Camellia sinensis var. sinensis HOM05D000429 ORTHO05D000352 3.6e-08 62.0 118 32.2
Manes.07G072438 Manihot esculenta HOM05D000429 ORTHO05D000352 3.6e-08 62.0 115 33.0
CSS0028604 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 6.1e-08 61.2 120 33.3
CSS0046711 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 6.1e-08 61.2 120 33.3
Ah.01g016560 Amaranthus hybridus HOM05D016717 ORTHO05D000352 1.4e-07 60.1 112 35.7
Ah.01g016570 Amaranthus hybridus HOM05D016717 ORTHO05D000352 1.4e-07 60.1 112 35.7
CSS0002712 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.4e-07 60.1 119 36.1
CSS0037010 Camellia sinensis var. sinensis HOM05D000429 ORTHO05D000352 1.4e-07 60.1 117 34.2
CSS0043325 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.4e-07 60.1 119 36.1
CSS0014631 Camellia sinensis var. sinensis HOM05D000429 ORTHO05D000352 1.8e-07 59.7 120 32.5
AUR62013405 Chenopodium quinoa HOM05D000429 ORTHO05D000352 1.8e-07 59.7 112 32.1
MBI08_g16120_MAGBIO Magnolia biondii HOM05D000429 ORTHO05D000352 1.8e-07 59.7 116 32.8
AUR62044001 Chenopodium quinoa HOM05D000429 ORTHO05D000352 3.0e-07 58.9 97 32.0
AUR62032694 Chenopodium quinoa HOM05D000429 ORTHO05D000352 3.9e-07 58.5 94 35.1
CANSAT25G3092 Cannabis sativa HOM05D000429 ORTHO05D000352 6.7e-07 57.8 110 32.7
CANSAT35G1116 Cannabis sativa HOM05D000429 ORTHO05D000352 6.7e-07 57.8 113 33.6
arahy.Tifrunner.gnm1.ann1.UC2LFY Arachis hypogaea HOM05D000429 ORTHO05D000352 8.8e-07 57.4 109 32.1
BolC7t42999H Brassica oleracea HOM05D000429 ORTHO05D000352 8.8e-07 57.4 114 33.3
AUR62038495 Chenopodium quinoa HOM05D000429 ORTHO05D000352 8.8e-07 57.4 112 32.1
QL11p049215 Quercus lobata HOM05D000047 ORTHO05D000044 1.1e-06 57.0 112 32.1
QL05p012956 Quercus lobata HOM05D000047 ORTHO05D000044 1.5e-06 56.6 112 32.1
QL08p065228 Quercus lobata HOM05D000047 ORTHO05D000044 1.5e-06 56.6 112 32.1
AUR62035460 Chenopodium quinoa HOM05D000429 ORTHO05D000352 2.0e-06 56.2 97 30.9
AUR62042050 Chenopodium quinoa HOM05D000429 ORTHO05D000352 2.0e-06 56.2 112 32.1
Oeu044645.1 Olea europaea HOM05D000429 ORTHO05D000352 2.0e-06 56.2 115 33.0
CSS0025671 Camellia sinensis var. sinensis HOM05D000429 ORTHO05D000352 2.6e-06 55.8 115 33.0
DCAR_031921 Daucus carota HOM05D000047 ORTHO05D000044 2.6e-06 55.8 114 35.1
Oeu033810.1 Olea europaea HOM05D000429 ORTHO05D000352 2.6e-06 55.8 115 32.2
Oeu033863.1 Olea europaea HOM05D000429 ORTHO05D000352 2.6e-06 55.8 115 32.2
arahy.Tifrunner.gnm1.ann1.99K3J2 Arachis hypogaea HOM05D000047 ORTHO05D000044 3.3e-06 55.5 109 29.4
CANSAT21G2111 Cannabis sativa HOM05D008422 ORTHO05D000352 3.3e-06 55.5 110 29.1
Oeu064652.1 Olea europaea HOM05D000429 ORTHO05D000352 3.3e-06 55.5 115 32.2
Oeu057937.1 Olea europaea HOM05D000429 ORTHO05D000352 4.4e-06 55.1 115 31.3
Oeu064691.1 Olea europaea HOM05D000429 ORTHO05D000352 4.4e-06 55.1 115 32.2
CANSAT11G0599 Cannabis sativa HOM05D000429 ORTHO05D000352 5.7e-06 54.7 113 36.3
CANSAT56G0555 Cannabis sativa HOM05D000429 ORTHO05D000352 5.7e-06 54.7 114 32.5
Oeu037482.1 Olea europaea HOM05D000429 ORTHO05D000352 5.7e-06 54.7 115 31.3
Oeu043216.1 Olea europaea HOM05D000429 ORTHO05D000352 5.7e-06 54.7 115 32.2
Oeu045230.1 Olea europaea HOM05D000047 ORTHO05D000044 5.7e-06 54.7 117 34.2
Manes.10G076111 Manihot esculenta HOM05D000047 ORTHO05D000352 7.4e-06 54.3 93 34.4
Oeu058894.1 Olea europaea HOM05D000047 ORTHO05D008058 9.7e-06 53.9 115 32.2


User provided reference genes

Program Settings