Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 9.3e-76 287.0 163 100.0
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 8.0e-35 151.0 167 61.1
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 4.5e-30 135.2 163 54.6
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 5.7e-25 118.2 163 42.3
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 3.2e-23 112.5 154 48.7
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 1.3e-21 107.1 152 48.0
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 8.6e-21 104.4 167 46.7
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.5e-20 103.6 167 46.1
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 1.9e-20 103.2 167 46.1
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 4.3e-20 102.1 164 40.2
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 5.6e-20 101.7 157 43.3
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 3.6e-19 99.0 147 43.5
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 4.7e-19 98.6 167 45.5
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 1.0e-18 97.4 165 40.6
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 4.0e-18 95.5 174 39.1
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 5.2e-18 95.1 154 41.6
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 1.2e-17 94.0 156 38.5
Lalb_Chr07g0184821 Lupinus albus HOM05D007384 ORTHO05D008511 2.0e-17 93.2 158 52.5
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 5.8e-17 91.7 164 47.6
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 9.8e-17 90.9 156 45.5
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 9.8e-17 90.9 165 40.0
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 3.7e-16 89.0 175 36.6
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 4.9e-16 88.6 158 47.5
arahy.Tifrunner.gnm1.ann1.AK8RBW Arachis hypogaea HOM05D007384 ORTHO05D008511 6.4e-16 88.2 155 49.0
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 3.2e-15 85.9 151 38.4
Atru.chr4.403 Acer truncatum HOM05D007384 ORTHO05D008511 7.8e-14 81.3 161 42.9
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 7.8e-14 81.3 159 44.7
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 7.8e-14 81.3 159 47.8
Lalb_Chr12g0203551 Lupinus albus HOM05D007384 ORTHO05D008511 7.8e-14 81.3 158 43.7
Phvul.002G264500 Phaseolus vulgaris HOM05D007384 ORTHO05D008511 7.8e-14 81.3 151 49.7
TPR.G40723 Trifolium pratense HOM05D007384 ORTHO05D008511 7.8e-14 81.3 152 38.2
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 1.0e-13 80.9 163 38.0
Gorai.011G111700 Gossypium raimondii HOM05D007384 ORTHO05D008511 1.0e-13 80.9 157 44.6
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 1.0e-13 80.9 150 40.7
Cc07_g16090 Coffea canephora HOM05D007384 ORTHO05D008511 1.3e-13 80.5 169 33.1
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 1.7e-13 80.1 156 42.9
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 1.7e-13 80.1 156 42.9
Prupe.6G173600 Prunus persica HOM05D007384 ORTHO05D008511 2.5e-12 76.3 153 44.4
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 7.3e-12 74.7 171 33.9
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 9.5e-12 74.3 162 34.0
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 1.2e-11 73.9 170 34.1
Rhsim10G0013800 Rhododendron simsii HOM05D007384 ORTHO05D008511 3.6e-11 72.4 162 42.0
Duzib147G1655 Durio zibethinus HOM05D007384 ORTHO05D008511 6.2e-11 71.6 103 42.7
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 6.2e-11 71.6 167 33.5
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 8.0e-11 71.2 166 36.1
MSTRG.23314 Avicennia marina HOM05D007384 ORTHO05D008511 1.4e-10 70.5 162 32.7
SalBow5G0260 Salvia bowleyana HOM05D007384 ORTHO05D008511 1.4e-10 70.5 163 31.9
SalBow5G4202 Salvia bowleyana HOM05D007384 ORTHO05D008511 1.4e-10 70.5 163 31.9
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 1.8e-10 70.1 167 33.5
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 3.1e-10 69.3 146 35.6
arahy.Tifrunner.gnm1.ann1.XNBA0B Arachis hypogaea HOM05D007384 ORTHO05D008511 4.0e-10 68.9 63 55.6
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 6.8e-10 68.2 159 39.6
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 8.9e-10 67.8 157 32.5
arahy.Tifrunner.gnm1.ann1.P053PK Arachis hypogaea HOM05D007384 ORTHO05D008511 8.9e-10 67.8 170 32.4
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 2.0e-09 66.6 169 32.0
Oeu028376.1 Olea europaea HOM05D007384 ORTHO05D008511 2.0e-09 66.6 166 36.1
arahy.Tifrunner.gnm1.ann1.3HN607 Arachis hypogaea HOM05D007384 ORTHO05D008511 4.4e-09 65.5 158 34.2
Oeu028378.1 Olea europaea HOM05D007384 ORTHO05D008511 4.4e-09 65.5 158 37.3
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 4.4e-09 65.5 170 42.4
Lj1g0001463 Lotus japonicus HOM05D007384 ORTHO05D008511 9.8e-09 64.3 156 33.3
SGA_v2.0_scaffold47G17711 Striga asiatica HOM05D007384 ORTHO05D008511 1.3e-08 63.9 162 41.4
Sabra07G0068500 Salix brachista HOM05D007384 ORTHO05D008511 1.7e-08 63.5 111 37.8
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 1.7e-08 63.5 159 37.7
Psat5g065520 Pisum sativum HOM05D007384 ORTHO05D008511 2.2e-08 63.2 170 35.3
Cfa002748 Carpinus fangiana HOM05D007384 ORTHO05D008511 4.9e-08 62.0 191 31.4
Sp2g27960 Schrenkiella parvula HOM05D012887 ORTHO05D008511 4.9e-08 62.0 81 49.4
Oeu028527.1 Olea europaea HOM05D007384 ORTHO05D008511 6.4e-08 61.6 160 33.1
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 6.4e-08 61.6 163 32.5
Rhsim08G0006700 Rhododendron simsii HOM05D007384 ORTHO05D008511 6.4e-08 61.6 171 39.2
Hund03542 Selenicereus undatus HOM05D007384 ORTHO05D008511 1.4e-07 60.5 169 32.0
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 1.9e-07 60.1 165 29.7
BcaB02g09838 Brassica carinata HOM05D012887 ORTHO05D008511 2.4e-07 59.7 70 47.1
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 2.4e-07 59.7 159 30.8
VMungo1309G0400 Vigna mungo HOM05D007384 ORTHO05D008511 2.4e-07 59.7 151 38.4
Eucgr.I00328 Eucalyptus grandis HOM05D007384 ORTHO05D008511 5.4e-07 58.5 160 40.0
MSTRG.2538 Avicennia marina HOM05D007384 ORTHO05D008511 9.2e-07 57.8 163 36.2
BolC3t18390H Brassica oleracea HOM05D012887 ORTHO05D008511 1.6e-06 57.0 153 31.4
Glyma.06G146100 Glycine max HOM05D007384 ORTHO05D008511 2.1e-06 56.6 163 34.4
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 2.1e-06 56.6 165 32.1
BcaC01g02721 Brassica carinata HOM05D012887 ORTHO05D008511 3.5e-06 55.8 151 31.1
C03p61290 Brassica napus HOM05D012887 ORTHO05D008511 3.5e-06 55.8 151 31.1
Glyma.04G219700 Glycine max HOM05D007384 ORTHO05D008511 3.5e-06 55.8 64 45.3
CSS0019294 Camellia sinensis var. sinensis HOM05D007384 ORTHO05D008511 4.6e-06 55.5 105 38.1
Gohir.A02G134800 Gossypium hirsutum HOM05D007384 ORTHO05D008511 6.0e-06 55.1 72 47.2
TAR628G0188 Trochodendron aralioides HOM05D007384 ORTHO05D008511 6.0e-06 55.1 174 27.6


User provided reference genes

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