Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 7.7e-244 846.7 413 100.0
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 9.2e-237 823.2 410 97.6
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 9.9e-215 750.0 406 87.4
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 4.1e-213 744.6 406 88.2
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 9.2e-213 743.4 406 87.7
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.2e-212 743.0 406 87.7
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 2.3e-211 738.8 406 87.2
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.6e-209 732.6 408 86.5
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 2.1e-209 732.3 406 86.7
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 6.2e-209 730.7 408 84.8
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 2.4e-208 728.8 408 85.0
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 8.9e-208 726.9 402 86.1
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.6e-207 725.3 408 85.3
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 4.4e-207 724.5 407 86.5
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 7.6e-207 723.8 408 85.0
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 9.9e-207 723.4 408 84.8
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 6.4e-206 720.7 408 84.8
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.1e-205 719.9 406 84.7
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.9e-205 719.2 406 85.7
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 2.4e-205 718.8 406 85.0
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.2e-205 718.4 408 84.6
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 3.2e-205 718.4 408 84.6
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.3e-205 716.8 403 85.4
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.7e-204 715.3 408 84.1
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 6.0e-204 714.1 406 84.5
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 7.8e-204 713.8 406 84.7
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.7e-203 712.6 407 83.8
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.9e-203 711.4 407 84.3
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.5e-202 709.5 408 82.4
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 3.3e-202 708.4 408 82.8
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 3.3e-202 708.4 421 81.5
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.3e-202 708.0 408 82.8
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 4.3e-202 708.0 421 81.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 4.8e-201 704.5 404 83.2
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 6.2e-201 704.1 406 82.5
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 8.1e-201 703.7 408 82.6
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.1e-200 703.4 406 83.3
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 1.4e-200 703.0 406 83.3
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.4e-200 703.0 404 81.7
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.4e-200 702.2 407 83.0
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 3.1e-200 701.8 405 83.0
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 4.0e-200 701.4 408 81.6
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 4.0e-200 701.4 405 82.2
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.9e-200 700.7 408 81.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.2e-199 699.9 405 83.0
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.2e-199 699.9 405 82.5
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 2.6e-199 698.7 405 82.2
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.9e-198 695.3 399 81.7
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 6.4e-198 694.1 406 84.2
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.1e-197 693.3 404 80.9
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.9e-197 692.6 404 80.7
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 3.5e-196 688.3 404 81.9
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 4.6e-196 688.0 404 82.2
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 6.0e-196 687.6 406 80.8
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 6.0e-196 687.6 404 81.9
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 7.9e-196 687.2 402 80.3
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 7.9e-196 687.2 404 80.0
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.3e-195 686.4 404 80.4
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.9e-194 682.6 408 78.4
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.9e-194 682.6 404 80.9
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 3.3e-194 681.8 405 79.0
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 7.3e-194 680.6 408 78.7
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.3e-193 679.9 406 79.8
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.3e-193 679.9 408 78.7
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.6e-193 679.5 408 78.7
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 1.6e-193 679.5 404 79.0
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 2.8e-193 678.7 406 78.1
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 3.6e-193 678.3 406 79.6
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 6.2e-193 677.6 408 78.4
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 6.2e-193 677.6 415 77.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.4e-192 676.4 408 78.2
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.2e-191 673.3 404 78.2
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.5e-191 672.9 403 80.9
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 2.0e-191 672.5 381 84.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 3.4e-191 671.8 406 77.6
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 4.5e-191 671.4 381 84.0
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 5.8e-191 671.0 406 77.6
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 7.6e-191 670.6 406 78.6
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 7.6e-191 670.6 406 77.6
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.3e-190 669.8 406 80.3
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.3e-190 669.8 408 79.2
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.3e-190 669.8 407 79.1
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.7e-190 669.5 408 79.2
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 6.4e-190 667.5 405 78.0
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.1e-189 666.8 405 76.5
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 4.2e-189 664.8 407 78.1
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 7.1e-189 664.1 406 79.3
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.2e-188 663.3 406 76.8
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-188 663.3 406 78.8
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 2.1e-188 662.5 406 77.6
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 3.5e-188 661.8 407 78.1
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.1e-187 657.9 405 78.0
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 6.7e-187 657.5 403 78.4
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.1e-186 656.8 402 78.1
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 7.4e-186 654.1 408 76.2
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 7.4e-186 654.1 406 77.6
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.8e-185 652.1 457 70.7
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 4.8e-185 651.4 406 75.6
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.4e-184 649.8 409 78.2
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 9.0e-184 647.1 408 77.5
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 2.6e-183 645.6 404 76.5
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 2.6e-183 645.6 408 75.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 2.9e-182 642.1 406 75.1
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 3.8e-182 641.7 369 84.0
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 4.9e-182 641.3 372 82.3
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 8.4e-182 640.6 372 82.3
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 7.1e-181 637.5 406 74.4
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.6e-180 636.3 441 71.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 2.7e-180 635.6 402 75.6
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 2.7e-180 635.6 402 75.6
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 4.6e-180 634.8 404 76.2
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.3e-179 632.5 406 74.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 3.0e-179 632.1 367 84.7
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 1.1e-178 630.2 407 74.4
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 6.2e-177 624.4 381 78.0
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 4.1e-176 621.7 404 77.2
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 2.0e-175 619.4 403 75.7
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.6e-172 609.8 371 77.4
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 3.0e-171 605.5 369 78.3
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.2e-164 583.6 406 67.7
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.3e-163 579.3 415 68.0
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 3.0e-163 578.9 407 68.1
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 4.5e-159 565.1 412 67.7
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.7e-154 547.4 418 65.6
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 2.4e-144 516.2 413 60.8
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.4e-144 516.2 408 61.3
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 3.1e-144 515.8 404 63.4
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 7.5e-138 494.6 383 63.7
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 7.5e-130 468.0 433 54.3
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 3.8e-126 455.7 404 55.9
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.3e-125 452.2 393 58.3
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 7.3e-125 451.4 404 59.2
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 6.1e-124 448.4 402 54.7
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 2.7e-119 433.0 310 68.4
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.0e-118 431.0 268 76.9
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.3e-117 425.6 269 77.0
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 6.0e-111 405.2 272 72.8
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 8.6e-110 401.4 220 89.1
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 7.1e-104 381.7 306 58.5
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 7.3e-101 371.7 313 64.2
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.2e-90 337.8 445 42.0
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.7e-89 334.0 441 43.8
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 4.6e-63 246.1 227 58.1
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 4.8e-60 236.1 459 32.0
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.2e-52 210.7 169 66.3
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 3.8e-49 199.9 415 32.8
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 3.8e-49 199.9 465 31.6
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 1.1e-45 188.3 91 95.6
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.4e-43 181.4 128 70.3
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 5.3e-43 179.5 106 77.4
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.4e-42 176.8 118 73.7
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 3.6e-39 166.8 243 39.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 1.4e-38 164.9 82 97.6
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.8e-38 164.5 396 32.1
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 2.3e-38 164.1 169 52.1
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 3.9e-38 163.3 155 58.1
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.8e-30 137.9 70 94.3
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 8.5e-25 119.0 86 64.0
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.4e-14 85.1 40 97.5
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 5.2e-14 83.2 146 36.3
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 6.8e-14 82.8 40 92.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 2.2e-12 77.8 48 72.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 3.5e-10 70.5 37 83.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 1.7e-09 68.2 33 84.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 4.3e-08 63.5 100 40.0
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 2.8e-07 60.8 351 22.5
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 3.6e-07 60.5 351 22.5
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 4.7e-07 60.1 351 22.5
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 6.1e-07 59.7 351 22.5
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 8.0e-07 59.3 351 22.5
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 1.4e-06 58.5 351 22.2


User provided reference genes

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