Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 0.0e+00 1273.1 688 100.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.7e-227 793.1 637 64.7
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 7.9e-217 757.7 633 63.7
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.9e-213 744.6 652 61.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 9.0e-213 744.2 640 61.2
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.5e-212 743.4 644 62.0
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 7.6e-212 741.1 634 61.7
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.2e-211 739.6 637 62.0
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.1e-210 737.3 632 61.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.2e-210 735.3 629 63.3
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.0e-208 729.2 642 59.8
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 4.3e-207 725.3 656 59.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 4.1e-205 718.8 642 60.6
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.1e-199 700.7 636 59.0
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.4e-197 693.7 625 59.2
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 5.3e-197 691.8 648 59.1
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.9e-195 686.0 652 58.7
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.6e-193 680.2 647 56.1
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 6.1e-193 678.3 627 57.6
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 5.1e-192 675.2 643 58.6
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 6.7e-192 674.9 649 57.3
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.1e-191 674.1 656 55.8
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.7e-190 670.2 656 55.6
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 2.8e-190 669.5 643 58.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 8.2e-190 667.9 650 56.5
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.4e-189 667.2 643 57.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.2e-188 664.1 649 55.6
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 2.6e-188 662.9 648 56.6
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.0e-187 661.0 629 58.3
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 8.5e-187 657.9 640 56.9
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.1e-186 657.5 648 55.4
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.4e-186 657.1 635 56.5
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.4e-186 657.1 642 56.4
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 5.5e-186 655.2 640 56.7
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 5.5e-186 655.2 648 56.2
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.0e-184 651.0 629 58.0
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.4e-184 650.6 638 57.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 5.2e-184 648.7 642 55.9
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 6.7e-184 648.3 629 57.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 7.4e-183 644.8 644 54.5
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.2e-182 643.3 629 57.1
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.2e-182 643.3 632 55.5
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.4e-181 640.6 661 53.3
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 9.1e-181 637.9 646 55.3
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 9.1e-181 637.9 645 55.0
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 2.6e-180 636.3 637 55.7
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.5e-180 635.6 629 57.1
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.0e-179 634.4 642 55.3
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.1e-178 630.9 646 54.0
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.2e-178 629.4 653 53.0
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 5.5e-178 628.6 674 52.5
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.2e-177 627.5 644 53.9
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 3.0e-176 622.9 643 53.5
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 9.7e-175 617.8 640 53.0
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.1e-173 612.8 618 54.2
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 4.1e-173 612.5 632 54.1
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.0e-171 607.8 637 54.0
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.5e-170 603.2 679 49.8
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.2e-170 602.8 628 53.8
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.6e-169 600.5 637 52.4
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.6e-169 600.5 634 53.3
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.0e-168 597.8 633 51.5
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 2.6e-167 593.2 638 52.5
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.3e-166 590.9 543 59.1
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 4.8e-166 589.0 657 50.7
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 6.3e-166 588.6 633 51.0
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.4e-165 587.4 643 52.9
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 4.1e-165 585.9 644 50.9
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 5.4e-165 585.5 650 50.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.2e-164 584.3 644 50.6
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-164 583.9 635 50.2
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.6e-164 583.9 657 50.1
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.0e-163 581.3 634 50.8
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 3.8e-163 579.3 633 51.3
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 3.8e-163 579.3 657 50.2
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 5.0e-163 578.9 637 50.9
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 5.0e-163 578.9 636 50.3
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 6.6e-163 578.6 599 52.4
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.2e-161 574.3 623 51.4
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 8.0e-161 571.6 641 50.9
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.3e-160 570.1 641 49.6
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 4.0e-160 569.3 641 49.5
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 6.8e-160 568.5 630 52.2
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 2.6e-159 566.6 633 49.6
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 4.4e-159 565.8 618 50.3
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 7.5e-159 565.1 640 50.3
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.7e-158 563.9 633 49.1
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.8e-157 560.5 634 50.0
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 9.2e-157 558.1 637 50.5
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.8e-155 552.7 634 49.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 7.3e-154 548.5 623 49.1
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.2e-153 547.7 658 49.1
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 3.1e-152 543.1 642 49.5
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 2.0e-151 540.4 626 49.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 3.7e-150 536.2 617 46.8
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 6.4e-150 535.4 635 49.1
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.4e-149 534.3 626 50.0
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 9.2e-149 531.6 631 47.2
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 1.8e-144 517.3 634 48.3
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 5.2e-144 515.8 643 47.4
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.7e-142 510.8 658 46.7
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 3.2e-141 506.5 539 50.3
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 4.1e-141 506.1 528 52.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.5e-140 503.1 648 45.5
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.5e-140 503.1 555 51.2
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 6.0e-140 502.3 591 47.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 2.3e-139 500.4 615 47.5
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 6.6e-139 498.8 587 45.7
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 8.1e-137 491.9 634 44.2
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.5e-122 443.7 624 42.5
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 7.3e-122 442.2 629 43.2
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.8e-120 437.6 632 41.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.9e-115 419.9 639 40.4
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 4.0e-112 409.8 702 37.7
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.0e-107 395.2 426 49.5
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.6e-105 387.9 582 41.1
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.7e-86 324.7 743 31.5
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 9.4e-85 318.9 676 34.9
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 6.1e-84 316.2 643 34.7
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.7e-83 312.8 682 32.3
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.3e-70 271.9 654 31.7
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.7e-63 246.1 460 36.3
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.3e-57 228.8 670 27.8
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.9e-53 214.9 459 32.9
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-49 202.2 454 30.6
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 6.6e-46 189.9 127 74.0
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.4e-43 182.2 188 53.2
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.8e-43 181.8 172 59.3
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.9e-41 173.7 387 31.3
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.4e-40 170.2 213 45.1
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 1.3e-38 165.6 129 59.7
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.9e-38 164.5 154 56.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 5.0e-38 163.7 95 74.7
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 5.0e-38 163.7 317 34.7
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.5e-29 135.6 130 55.4
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 8.3e-17 93.2 259 32.8
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 4.1e-16 90.9 93 54.8
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 8.1e-12 76.6 136 32.4
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 8.9e-11 73.2 162 35.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 3.8e-09 67.8 407 23.8
Haze_13244 Corylus avellana HOM05D001439 ORTHO05D002726 9.3e-08 63.2 275 27.6
Cfa014661 Carpinus fangiana HOM05D001439 ORTHO05D002726 1.2e-07 62.8 275 28.0
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 2.7e-07 61.6 70 47.1
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 3.5e-07 61.2 70 45.7
SGA_v2.0_scaffold29G12279 Striga asiatica HOM05D001312 ORTHO05D001832 4.6e-07 60.8 184 32.6
AagrBONN_evm.TU.Sc2ySwM_344.3436 Anthoceros agrestis HOM05D005219 ORTHO05D006451 6.0e-07 60.5 51 56.9
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 7.8e-07 60.1 77 39.0
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 7.8e-07 60.1 70 44.3
SGA_v2.0_scaffold8G04558 Striga asiatica HOM05D001312 ORTHO05D001832 1.0e-06 59.7 184 31.5
Ca_18589_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 1.3e-06 59.3 294 28.6
CiPaw.03G181600 Carya illinoinensis HOM05D001439 ORTHO05D002726 1.7e-06 58.9 270 28.1
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 2.3e-06 58.5 70 45.7
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 3.0e-06 58.2 138 31.2
Ah.06g194370 Amaranthus hybridus HOM05D001312 ORTHO05D001832 3.9e-06 57.8 182 26.4
Peaxi162Scf00926g00006 Petunia axillaris HOM05D001439 ORTHO05D002726 3.9e-06 57.8 70 40.0
MSTRG.21358 Avicennia marina HOM05D001312 ORTHO05D001832 5.1e-06 57.4 190 26.3
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 5.1e-06 57.4 86 40.7
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 5.1e-06 57.4 276 28.3
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 6.6e-06 57.0 129 34.9
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 8.7e-06 56.6 58 50.0


User provided reference genes

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