Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G075600 Manihot esculenta HOM05D005812 ORTHO05D007232 8.5e-131 470.3 234 100.0
Manes.12G134500 Manihot esculenta HOM05D005812 ORTHO05D007232 4.4e-95 351.7 234 74.4
Potri.007G093200 Populus trichocarpa HOM05D005812 ORTHO05D007232 9.3e-69 264.2 222 58.6
GSVIVG01002272001 Vitis vinifera HOM05D005812 ORTHO05D007232 1.6e-57 226.9 228 50.0
CiPaw.03G142200 Carya illinoinensis HOM05D005812 ORTHO05D007232 1.1e-56 224.2 236 50.0
Gohir.D11G221400 Gossypium hirsutum HOM05D005812 ORTHO05D007232 1.5e-55 220.3 223 50.7
Gorai.007G238400 Gossypium raimondii HOM05D005812 ORTHO05D007232 1.5e-55 220.3 223 50.7
Cfa002656 Carpinus fangiana HOM05D005812 ORTHO05D007232 2.6e-55 219.5 248 48.8
Thecc.01G101100 Theobroma cacao HOM05D005812 ORTHO05D007232 2.9e-54 216.1 220 51.4
PGR102G1433 Punica granatum HOM05D005812 ORTHO05D007232 3.2e-53 212.6 242 45.9
Gohir.A11G201100 Gossypium hirsutum HOM05D005812 ORTHO05D007232 7.2e-53 211.5 259 44.8
TAR628G0897 Trochodendron aralioides HOM05D005812 ORTHO05D007232 9.3e-53 211.1 225 47.1
QL06p049491 Quercus lobata HOM05D005812 ORTHO05D007232 1.6e-52 210.3 227 48.9
Duzib264G1072 Durio zibethinus HOM05D005812 ORTHO05D007232 3.6e-52 209.1 220 48.6
Atru.chr4.60 Acer truncatum HOM05D005812 ORTHO05D007232 7.9e-52 208.0 241 47.3
Cpa.g.sc230.1 Carica papaya HOM05D005812 ORTHO05D007232 5.1e-51 205.3 240 46.2
Duzib147G1550 Durio zibethinus HOM05D005812 ORTHO05D007232 2.2e-49 199.9 235 46.4
CiPaw.04G099800 Carya illinoinensis HOM05D005812 ORTHO05D007232 8.2e-49 198.0 248 44.8
Gorai.008G090000 Gossypium raimondii HOM05D005812 ORTHO05D007232 1.4e-48 197.2 223 48.0
Gorai.011G113200 Gossypium raimondii HOM05D005812 ORTHO05D007232 1.2e-47 194.1 235 44.3
Duzib187G0152 Durio zibethinus HOM05D005812 ORTHO05D007232 1.5e-47 193.7 220 46.4
Gohir.A10G085300 Gossypium hirsutum HOM05D005812 ORTHO05D007232 7.7e-47 191.4 235 43.8
Gohir.A12G083366 Gossypium hirsutum HOM05D005812 ORTHO05D007232 1.0e-46 191.0 222 46.4
Ciclev10026269m.g Citrus clementina HOM05D005812 ORTHO05D007232 2.2e-46 189.9 271 41.3
Prupe.6G187400 Prunus persica HOM05D005812 ORTHO05D007232 5.5e-45 185.3 224 43.8
Gohir.D10G103600 Gossypium hirsutum HOM05D005812 ORTHO05D007232 9.4e-45 184.5 235 43.0
Eucgr.H04782 Eucalyptus grandis HOM05D005812 ORTHO05D007232 1.1e-42 177.6 231 42.4
Haze_24926 Corylus avellana HOM05D005812 ORTHO05D007232 2.8e-41 172.9 234 44.9
MD15G1323600 Malus domestica HOM05D005812 ORTHO05D007232 2.4e-40 169.9 226 40.7
Dinv13192 Davidia involucrata HOM05D005812 ORTHO05D007232 1.2e-39 167.5 160 53.1
THA.LOC104807691 Tarenaya hassleriana HOM05D005812 ORTHO05D007232 1.7e-38 163.7 225 43.6
Sabra07G0077200 Salix brachista HOM05D005812 ORTHO05D007232 1.1e-37 161.0 145 51.7
RcHm_v2.0_Chr2g0113441 Rosa chinensis HOM05D005812 ORTHO05D007232 1.9e-37 160.2 225 40.9
ClCG10G008980 Citrullus lanatus HOM05D005812 ORTHO05D007232 2.3e-35 153.3 207 43.0
Glyma.11G240400 Glycine max HOM05D005812 ORTHO05D007232 6.7e-35 151.8 237 39.7
Actinidia06567 Actinidia chinensis HOM05D005812 ORTHO05D007232 4.4e-34 149.1 168 47.6
Lj6g0021205 Lotus japonicus HOM05D005812 ORTHO05D007232 5.7e-34 148.7 222 38.7
Sp7g35990 Schrenkiella parvula HOM05D005812 ORTHO05D007232 7.4e-34 148.3 234 41.5
Carub.0007s0184 Capsella rubella HOM05D005812 ORTHO05D007232 9.7e-34 147.9 234 40.2
Dinv21904 Davidia involucrata HOM05D005812 ORTHO05D007232 9.7e-34 147.9 164 48.2
FvH4_1g20820 Fragaria vesca HOM05D005812 ORTHO05D007232 9.7e-34 147.9 234 36.3
CANSAT01G0800 Cannabis sativa HOM05D005812 ORTHO05D007232 1.3e-33 147.5 229 38.9
Gohir.D12G083200 Gossypium hirsutum HOM05D005812 ORTHO05D007232 1.7e-33 147.1 168 45.8
Actinidia20016 Actinidia chinensis HOM05D005812 ORTHO05D007232 2.2e-33 146.7 168 47.0
Psat5g090240 Pisum sativum HOM05D005812 ORTHO05D007232 4.8e-33 145.6 235 35.7
Thhalv10026058m.g Eutrema salsugineum HOM05D005812 ORTHO05D007232 4.1e-32 142.5 236 39.4
TPR.G17850 Trifolium pratense HOM05D005812 ORTHO05D007232 7.0e-32 141.7 221 37.6
arahy.Tifrunner.gnm1.ann1.I4SKYX Arachis hypogaea HOM05D005812 ORTHO05D007232 1.6e-31 140.6 224 38.8
arahy.Tifrunner.gnm1.ann1.LSP3Z9 Arachis hypogaea HOM05D005812 ORTHO05D007232 1.6e-31 140.6 224 38.8
MBI02_g31269_MAGBIO Magnolia biondii HOM05D005812 ORTHO05D007232 3.5e-31 139.4 231 37.2
AT4G39900 Arabidopsis thaliana HOM05D005812 ORTHO05D007232 5.9e-31 138.7 234 38.9
Glyma.18G016900 Glycine max HOM05D005812 ORTHO05D007232 5.9e-31 138.7 238 38.2
Sed0017830 Sechium edule HOM05D005812 ORTHO05D007232 1.0e-30 137.9 198 41.9
TWI74G1407 Tripterygium wilfordii HOM05D005812 ORTHO05D007232 3.8e-30 136.0 180 40.6
Lalb_Chr23g0277481 Lupinus albus HOM05D005812 ORTHO05D007232 5.0e-30 135.6 211 37.9
Medtr3g087150 Medicago truncatula HOM05D005812 ORTHO05D007232 6.5e-30 135.2 236 35.2
CARHR246800 Cardamine hirsuta HOM05D005812 ORTHO05D007232 3.2e-29 132.9 234 37.6
Phvul.001G252300 Phaseolus vulgaris HOM05D005812 ORTHO05D007232 4.2e-29 132.5 237 35.4
C03p78490 Brassica napus HOM05D005812 ORTHO05D007232 2.1e-28 130.2 233 38.2
BraA08t34281Z Brassica rapa HOM05D005812 ORTHO05D007232 2.1e-28 130.2 233 39.1
A08p23250 Brassica napus HOM05D005812 ORTHO05D007232 4.7e-28 129.0 233 38.6
Rhsim08G0010800 Rhododendron simsii HOM05D005812 ORTHO05D007232 6.1e-28 128.6 171 45.0
Ca_16522_v3 Cicer arietinum L. HOM05D005812 ORTHO05D007232 1.4e-27 127.5 201 37.8
BcaC01g00328 Brassica carinata HOM05D005812 ORTHO05D007232 1.8e-27 127.1 233 38.2
BcaB03g12290 Brassica carinata HOM05D005812 ORTHO05D007232 6.7e-27 125.2 230 38.3
BolC3t20101H Brassica oleracea HOM05D005812 ORTHO05D007232 6.7e-27 125.2 233 37.8
Nn5g30114 Nelumbo nucifera HOM05D005812 ORTHO05D007232 3.3e-26 122.9 169 43.8
BcaNung06391 Brassica carinata HOM05D005812 ORTHO05D007232 4.4e-26 122.5 207 37.7
Hma1.2p1_1428F.1_g282935 Hydrangea macrophylla HOM05D005812 ORTHO05D007232 4.4e-26 122.5 170 44.1
vmacro12958 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 1.7e-25 120.6 160 41.2
VMungo1383G2465 Vigna mungo HOM05D005812 ORTHO05D007232 2.8e-25 119.8 192 38.5
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 1.4e-24 117.5 180 41.1
Aqoxy6G00789 Aquilegia oxysepala HOM05D005812 ORTHO05D007232 2.4e-24 116.7 169 42.0
Actinidia28235 Actinidia chinensis HOM05D005812 ORTHO05D007232 5.3e-24 115.5 168 42.3
vmacro18598 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 1.3e-22 110.9 172 42.4
C01p00910 Brassica napus HOM05D005812 ORTHO05D007232 1.7e-22 110.5 199 40.2
PSO781G0022 Papaver somniferum HOM05D005812 ORTHO05D007232 1.7e-22 110.5 224 33.9
Sc03g0002070 Simmondsia chinensis HOM05D005812 ORTHO05D007232 1.7e-22 110.5 168 42.3
A01p00790 Brassica napus HOM05D005812 ORTHO05D007232 3.8e-22 109.4 200 39.5
BraA01t00082Z Brassica rapa HOM05D005812 ORTHO05D007232 3.8e-22 109.4 202 39.6
Cc07_g15160 Coffea canephora HOM05D005812 ORTHO05D007232 1.9e-21 107.1 172 38.4
AL7G12150 Arabidopsis lyrata HOM05D005812 ORTHO05D007232 2.5e-21 106.7 169 43.8
FAN19G2427 Fragaria x ananassa HOM05D005812 ORTHO05D007232 3.2e-21 106.3 182 33.0
BcaNung00911 Brassica carinata HOM05D005812 ORTHO05D007232 4.2e-21 105.9 200 40.0
PSO541G0090 Papaver somniferum HOM05D005812 ORTHO05D007232 5.5e-21 105.5 230 34.3
Lj2C549G6 Lonicera japonica HOM05D005812 ORTHO05D007232 9.4e-21 104.8 111 51.4
FAN23G0105 Fragaria x ananassa HOM05D005812 ORTHO05D007232 2.1e-20 103.6 154 35.1
MSTRG.3778 Avicennia marina HOM05D005812 ORTHO05D007232 2.7e-20 103.2 166 37.3
DCAR_014222 Daucus carota HOM05D005812 ORTHO05D007232 1.8e-19 100.5 168 34.5
MSTRG.2569 Avicennia marina HOM05D005812 ORTHO05D007232 5.2e-19 99.0 170 37.1
MSTRG.15713 Avicennia marina HOM05D005812 ORTHO05D007232 5.7e-18 95.5 129 40.3
Oeu051807.1 Olea europaea HOM05D005812 ORTHO05D007232 1.3e-17 94.4 136 39.0
CARHR113520 Cardamine hirsuta HOM05D005812 ORTHO05D007232 2.8e-17 93.2 163 39.9
Lsat_1_v5_gn_4_141220 Lactuca sativa HOM05D005812 ORTHO05D007232 2.8e-17 93.2 185 37.8
Migut.L00124 Erythranthe guttata HOM05D005812 ORTHO05D007232 2.4e-16 90.1 172 31.4
Hund16289 Selenicereus undatus HOM05D005812 ORTHO05D007232 2.4e-16 90.1 136 41.9
SalBow5G0456 Salvia bowleyana HOM05D005812 ORTHO05D007232 7.0e-16 88.6 164 31.7
Solyc04g055250.4 Solanum lycopersicum HOM05D005812 ORTHO05D007232 2.0e-15 87.0 178 33.1
ECA232G1467 Erigeron canadensis HOM05D005812 ORTHO05D007232 2.7e-15 86.7 167 35.9
HanXRQChr10g0305381 Helianthus annuus HOM05D005812 ORTHO05D007232 3.5e-15 86.3 162 35.8
PGSC0003DMG400001876 Solanum tuberosum HOM05D005812 ORTHO05D007232 3.5e-15 86.3 156 33.3
Peaxi162Scf00212g00413 Petunia axillaris HOM05D005812 ORTHO05D007232 7.7e-15 85.1 152 34.2
Sopen04g025100 Solanum pennellii HOM05D005812 ORTHO05D007232 7.7e-15 85.1 158 34.2
Nitab4.5_0000897g0060 Nicotiana tabacum HOM05D005812 ORTHO05D007232 1.0e-14 84.7 157 36.9
Aa31LG6G15360 Aethionema arabicum HOM05D000249 ORTHO05D000206 1.3e-14 84.3 158 34.8
AUR62002005 Chenopodium quinoa HOM05D005812 ORTHO05D007232 1.3e-14 84.3 131 38.9
CsaV3_4G008880 Cucumis sativus L. HOM05D005812 ORTHO05D007232 1.3e-14 84.3 128 39.1
CAN.G18.15 Capsicum annuum HOM05D005812 ORTHO05D007232 2.3e-14 83.6 128 36.7
CAN.G18.16 Capsicum annuum HOM05D005812 ORTHO05D007232 2.3e-14 83.6 128 37.5
MSTRG.23345 Avicennia marina HOM05D005812 ORTHO05D007232 5.0e-14 82.4 134 35.8
DCAR_010089 Daucus carota HOM05D005812 ORTHO05D007232 5.0e-14 82.4 167 32.9
Nitab4.5_0004651g0010 Nicotiana tabacum HOM05D005812 ORTHO05D007232 1.5e-13 80.9 167 32.9
Oeu001791.1 Olea europaea HOM05D005812 ORTHO05D007232 1.5e-13 80.9 114 39.5
AUR62003797 Chenopodium quinoa HOM05D005812 ORTHO05D007232 7.2e-13 78.6 131 36.6
Nitab4.5_0000083g0250 Nicotiana tabacum HOM05D005812 ORTHO05D007232 7.2e-13 78.6 145 35.2
BcaNung00793 Brassica carinata HOM05D005812 ORTHO05D007232 9.5e-13 78.2 127 39.4
EL10Ac6g15110 Beta vulgaris HOM05D005812 ORTHO05D007232 2.1e-12 77.0 129 34.9
HanXRQChr05g0145211 Helianthus annuus HOM05D005812 ORTHO05D007232 3.6e-12 76.3 166 31.9
Peaxi162Scf00611g00015 Petunia axillaris HOM05D005812 ORTHO05D007232 3.6e-12 76.3 159 35.2
Rhsim10G0163100 Rhododendron simsii HOM05D001481 ORTHO05D001865 6.1e-12 75.5 139 32.4
Ah.02g122540 Amaranthus hybridus HOM05D005812 ORTHO05D007232 8.8e-11 71.6 129 37.2
MELO3C018959.2 Cucumis melo HOM05D005812 ORTHO05D007232 2.2e-09 67.0 74 51.4
HanXRQChr09g0254761 Helianthus annuus HOM05D005812 ORTHO05D007232 2.8e-09 66.6 185 34.1
unitig_32.g11811 Utricularia gibba HOM05D005812 ORTHO05D007232 6.3e-09 65.5 172 28.5
ECA232G0795 Erigeron canadensis HOM05D005812 ORTHO05D007232 1.1e-08 64.7 171 32.2
unitig_88.g27721 Utricularia gibba HOM05D005812 ORTHO05D007232 3.1e-08 63.2 170 31.8
SalBow5G2541 Salvia bowleyana HOM05D005812 ORTHO05D007232 5.4e-08 62.4 102 37.3


User provided reference genes

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