Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 3.0e-201 705.3 445 100.0
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 3.3e-147 525.8 454 76.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.0e-120 436.8 465 62.2
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 3.8e-119 432.6 467 66.2
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 8.4e-119 431.4 470 60.2
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 4.6e-117 425.6 465 63.4
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 5.1e-116 422.2 450 61.6
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 8.7e-116 421.4 462 61.3
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.3e-114 417.5 482 62.4
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.4e-112 409.5 425 63.3
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.3e-111 407.5 466 59.9
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.7e-109 399.8 454 55.7
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.0e-108 397.9 464 59.9
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.3e-108 397.5 452 60.0
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.3e-108 396.7 455 54.7
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.9e-107 393.7 488 55.7
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.3e-106 391.0 460 59.3
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 8.1e-106 388.3 485 55.9
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 8.1e-106 388.3 426 61.7
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 3.4e-104 382.9 462 55.0
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 4.5e-104 382.5 474 59.7
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.9e-104 381.3 463 61.3
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 9.9e-104 381.3 449 62.6
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 2.9e-103 379.8 462 52.6
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.9e-103 379.8 463 61.8
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.4e-103 378.6 497 53.3
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 8.4e-103 378.3 465 54.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.4e-102 377.5 491 54.8
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.4e-102 377.5 481 57.8
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.4e-102 377.5 451 62.3
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.7e-101 373.2 451 62.5
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.9e-101 371.7 463 60.3
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.3e-100 370.9 410 55.9
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.3e-100 370.2 470 51.5
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 6.7e-100 368.6 243 77.0
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.3e-98 364.4 466 59.7
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.1e-98 363.6 449 52.1
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.8e-98 363.2 469 60.3
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 4.8e-98 362.5 476 52.3
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 6.2e-98 362.1 235 78.7
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.1e-97 361.3 449 54.8
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.8e-97 360.5 447 55.0
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.8e-97 360.5 259 71.0
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 9.0e-97 358.2 254 71.3
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 2.0e-96 357.1 244 72.5
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 2.6e-96 356.7 450 54.9
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.6e-96 356.7 260 70.0
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 7.6e-96 355.1 259 69.5
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 7.6e-96 355.1 453 60.0
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-95 354.8 451 54.8
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.0e-95 354.8 448 62.3
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.3e-95 354.4 451 51.7
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.2e-95 353.6 451 54.1
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 4.9e-95 352.4 244 70.9
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-94 350.9 260 68.1
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.4e-94 350.9 383 55.6
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.9e-94 350.5 447 55.7
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.5e-94 350.1 294 63.3
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 2.5e-94 350.1 259 68.3
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 9.3e-94 348.2 460 58.7
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.6e-93 347.4 474 55.9
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.1e-93 347.1 473 53.9
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 2.7e-93 346.7 474 55.5
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.5e-93 346.3 447 53.2
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.3e-92 344.4 452 51.5
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.8e-92 344.0 468 55.3
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 2.3e-92 343.6 260 67.3
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.9e-92 342.8 284 64.8
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 3.9e-92 342.8 260 67.3
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 6.7e-92 342.0 245 69.4
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 6.7e-92 342.0 245 69.4
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.5e-91 340.9 461 49.7
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.9e-91 340.5 284 64.8
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 2.5e-91 340.1 438 51.8
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 9.6e-91 338.2 452 53.3
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.1e-90 337.0 383 54.8
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 2.8e-90 336.7 437 49.0
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 3.7e-90 336.3 448 51.6
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 4.8e-90 335.9 483 52.4
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 4.8e-90 335.9 473 53.7
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 2.4e-89 333.6 475 51.4
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 5.3e-89 332.4 478 53.1
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.3e-89 332.4 479 51.6
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.6e-88 330.1 480 48.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 3.4e-88 329.7 265 65.7
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.4e-86 324.3 390 54.4
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 3.2e-86 323.2 260 63.8
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.2e-86 322.8 253 64.4
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 5.5e-86 322.4 455 53.2
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 5.5e-86 322.4 491 54.6
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 5.5e-86 322.4 443 49.2
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 9.3e-86 321.6 245 65.7
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-85 321.2 479 48.9
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.2e-85 321.2 480 50.8
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 3.5e-85 319.7 230 68.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.6e-85 319.3 264 65.9
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.1e-85 318.9 264 64.8
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 6.1e-85 318.9 419 50.1
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 8.7e-84 315.1 498 49.2
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.5e-83 314.3 248 66.5
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.5e-83 313.5 446 45.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 8.2e-82 308.5 305 55.7
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.4e-81 307.0 291 58.4
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.1e-81 306.6 286 57.3
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 5.3e-81 305.8 498 45.2
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 9.0e-81 305.1 242 64.5
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 4.5e-80 302.8 499 48.1
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.7e-79 300.8 449 47.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.7e-79 300.8 474 45.6
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.9e-79 300.1 488 51.2
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 7.2e-78 295.4 430 45.8
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.6e-77 294.3 489 45.0
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.7e-77 293.5 213 70.4
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 4.8e-74 282.7 482 49.6
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 6.5e-71 272.3 269 53.2
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 4.7e-69 266.2 285 51.9
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 4.7e-69 266.2 472 48.7
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 5.7e-67 259.2 255 52.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.2e-53 214.9 270 44.4
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 3.8e-47 193.4 239 43.5
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.9e-46 191.0 238 42.9
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.0e-43 181.0 270 37.4
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 5.7e-43 179.5 112 78.6
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 5.0e-39 166.4 225 38.2
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.2e-35 155.2 242 36.0
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 4.9e-34 149.8 230 39.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 8.3e-34 149.1 291 35.1
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.4e-33 148.3 199 48.7
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 3.2e-33 147.1 89 74.2
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.7e-32 144.1 207 38.6
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.1e-29 134.4 213 37.1
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 2.8e-29 134.0 298 51.7
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.0e-28 132.1 215 34.0
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 1.5e-27 128.3 211 32.2
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 7.5e-27 125.9 273 52.4
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.1e-25 122.1 248 31.9
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 2.7e-24 117.5 225 32.0
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.2e-21 108.6 206 34.0
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 8.1e-21 105.9 176 38.1
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 2.7e-16 90.9 127 41.7
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 2.3e-15 87.8 122 40.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 8.1e-13 79.3 197 28.9
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.3e-10 72.0 91 41.8
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.2e-10 71.2 130 35.4
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 3.7e-10 70.5 105 41.9
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 4.9e-10 70.1 49 53.1
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.9e-09 68.2 109 39.4
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 5.4e-09 66.6 177 28.2
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 7.1e-09 66.2 106 40.6
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 9.2e-09 65.9 54 44.4
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.2e-08 65.5 142 34.5
Zm00001eb394500 Zea mays HOM05D002775 ORTHO05D005562 1.5e-06 58.5 64 45.3
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 4.3e-06 57.0 143 25.9


User provided reference genes

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