Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.8e-40 168.7 79 100.0
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 4.7e-25 117.5 79 73.4
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.9e-22 108.2 79 67.1
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 6.4e-22 107.1 79 65.8
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 7.1e-21 103.6 76 64.5
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.6e-20 102.4 75 62.7
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 3.5e-20 101.3 79 65.8
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.6e-20 100.9 75 61.3
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.6e-20 100.9 80 63.8
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 7.8e-20 100.1 78 61.5
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.3e-19 99.4 80 62.5
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.1e-19 97.4 80 61.2
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 6.6e-19 97.1 76 61.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.9e-18 95.5 79 58.2
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.5e-18 95.1 79 59.5
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.3e-17 92.8 79 57.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.3e-17 92.8 79 57.0
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.3e-17 92.8 83 59.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.6e-17 92.4 76 60.5
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.8e-17 91.7 79 58.2
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.8e-17 90.9 79 57.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 4.8e-17 90.9 80 61.2
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 6.2e-17 90.5 79 54.4
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 4.0e-16 87.8 95 48.4
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 9.0e-16 86.7 75 58.7
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.2e-15 86.3 80 57.5
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.5e-15 85.9 79 54.4
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.0e-15 85.5 83 55.4
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.4e-15 84.7 76 55.3
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.5e-15 84.3 83 55.4
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.5e-15 84.3 83 55.4
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.3e-14 82.8 95 44.2
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.3e-14 82.8 95 44.2
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.7e-14 82.4 95 44.2
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.7e-14 82.4 75 58.7
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.9e-14 81.6 95 43.2
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 6.4e-14 80.5 79 55.7
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-13 79.3 80 52.5
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 4.2e-13 77.8 80 52.5
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 4.2e-13 77.8 71 56.3
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.4e-13 77.4 79 50.6
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 4.6e-12 74.3 74 51.4
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 4.6e-12 74.3 80 53.8
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 4.6e-12 74.3 75 49.3
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-11 73.2 81 50.6
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-11 72.8 82 46.3
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-11 72.8 82 46.3
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 2.3e-11 72.0 81 48.1
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 3.0e-11 71.6 76 53.9
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 3.0e-11 71.6 76 53.9
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 3.0e-11 71.6 76 53.9
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 6.7e-11 70.5 76 52.6
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 6.7e-11 70.5 76 52.6
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 8.7e-11 70.1 76 48.7
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 8.7e-11 70.1 76 48.7
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.1e-10 69.7 81 49.4
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-10 69.7 79 46.8
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-10 69.7 76 48.7
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-10 69.7 79 46.8
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.1e-10 69.7 79 46.8
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.1e-10 69.7 76 48.7
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 3.3e-10 68.2 51 62.7
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 4.3e-10 67.8 76 47.4
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 4.3e-10 67.8 70 55.7
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.3e-10 67.8 81 45.7
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 7.4e-10 67.0 43 65.1
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 7.4e-10 67.0 43 65.1
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.3e-09 66.2 83 41.0
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-09 65.9 81 48.1
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-09 65.9 81 48.1
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.6e-09 65.9 79 46.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.6e-09 65.9 70 47.1
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.1e-09 65.5 66 47.0
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.8e-09 65.1 79 48.1
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 3.7e-09 64.7 80 43.8
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 3.7e-09 64.7 67 46.3
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 3.7e-09 64.7 69 47.8
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.8e-09 64.3 69 49.3
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 4.8e-09 64.3 67 44.8
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 4.8e-09 64.3 67 44.8
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 4.8e-09 64.3 67 44.8
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 4.8e-09 64.3 67 44.8
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 4.8e-09 64.3 67 44.8
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 6.2e-09 63.9 60 46.7
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 6.2e-09 63.9 79 46.8
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 8.1e-09 63.5 65 46.2
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.1e-08 63.2 61 52.5
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 1.1e-08 63.2 51 60.8
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.1e-08 63.2 71 43.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-08 62.8 67 43.3
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.4e-08 62.8 74 44.6
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.4e-08 62.8 70 45.7
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 2.4e-08 62.0 66 42.4
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 5.3e-08 60.8 66 47.0
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.9e-08 60.5 68 45.6
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 9.0e-08 60.1 70 44.3
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.5e-07 59.3 37 62.2
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.5e-07 59.3 74 44.6
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 3.4e-07 58.2 81 42.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 3.4e-07 58.2 81 42.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 3.4e-07 58.2 81 42.0
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.4e-07 58.2 83 39.8
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 3.4e-07 58.2 65 44.6
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 3.4e-07 58.2 70 42.9
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.5e-07 57.8 64 43.8
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 5.8e-07 57.4 81 39.5
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 7.6e-07 57.0 75 40.0
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 9.9e-07 56.6 64 40.6
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 9.9e-07 56.6 71 40.8
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.3e-06 56.2 75 40.0
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.7e-06 55.8 76 42.1
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 1.7e-06 55.8 77 41.6
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-06 55.5 87 35.6
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-06 55.5 90 37.8
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-06 55.5 87 35.6
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 2.2e-06 55.5 80 41.2
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.9e-06 55.1 79 43.0
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 80 37.5
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 2.9e-06 55.1 65 47.7
Medtr6g034805 Medicago truncatula HOM05D004540 ORTHO05D004852 2.9e-06 55.1 69 43.5
Os04g0418100 Oryza sativa ssp. japonica HOM05D047234 ORTHO05D004852 2.9e-06 55.1 49 53.1
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.8e-06 54.7 61 44.3
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 6.4e-06 53.9 71 40.8
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 8.4e-06 53.5 71 42.3


User provided reference genes

Program Settings