Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 0.0e+00 3105.1 1562 100.0
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 0.0e+00 2742.6 1564 87.3
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 0.0e+00 2735.3 1567 87.6
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 0.0e+00 2694.5 1562 85.6
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 0.0e+00 2685.6 1562 85.5
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 0.0e+00 2662.5 1562 85.1
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 0.0e+00 2660.9 1563 84.5
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 2652.5 1573 84.5
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 2643.6 1564 84.1
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2639.8 1564 84.0
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 2612.0 1561 82.8
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 0.0e+00 2611.6 1564 83.4
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 2610.9 1562 83.0
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2610.5 1565 83.3
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2610.1 1561 82.8
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2608.9 1561 83.0
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 2594.3 1543 83.3
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 2589.3 1564 82.9
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2588.9 1567 82.7
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 0.0e+00 2583.5 1564 81.8
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 0.0e+00 2583.1 1566 81.7
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2581.2 1579 82.3
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 0.0e+00 2577.0 1567 82.6
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2573.9 1565 82.1
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 0.0e+00 2539.2 1565 80.1
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 2532.3 1564 80.2
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 2528.4 1564 80.7
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 0.0e+00 2511.9 1566 79.8
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 0.0e+00 2510.7 1563 79.4
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 0.0e+00 2503.4 1567 80.2
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 0.0e+00 2503.4 1563 79.8
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 0.0e+00 2496.1 1561 78.7
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 0.0e+00 2495.3 1561 78.5
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 2494.9 1562 80.2
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 2492.6 1564 79.1
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 2490.3 1561 79.2
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 0.0e+00 2485.3 1561 78.2
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 2484.9 1561 78.1
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 2481.8 1564 78.8
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 2481.4 1563 78.1
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 2478.7 1563 78.1
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 2476.8 1563 78.0
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 0.0e+00 2476.4 1561 78.2
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 0.0e+00 2474.1 1572 77.7
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 0.0e+00 2470.3 1562 77.6
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 0.0e+00 2468.0 1575 77.4
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 0.0e+00 2463.3 1561 77.7
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 0.0e+00 2461.4 1563 78.1
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 2455.6 1567 77.9
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2455.6 1566 77.0
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 2450.6 1564 77.6
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 0.0e+00 2449.9 1561 76.9
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 0.0e+00 2449.9 1676 74.2
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 2433.3 1565 77.3
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 2430.6 1566 77.3
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 0.0e+00 2429.1 1567 76.9
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 0.0e+00 2423.3 1562 77.3
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 0.0e+00 2421.7 1569 76.2
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 0.0e+00 2419.4 1529 79.3
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 0.0e+00 2415.2 1461 84.1
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 2406.7 1564 76.6
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 2403.6 1564 76.2
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 0.0e+00 2401.7 1561 75.8
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 2397.5 1564 76.1
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 2393.6 1621 74.3
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 2393.6 1575 75.7
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 2392.5 1575 75.9
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 0.0e+00 2375.5 1566 75.5
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 0.0e+00 2373.6 1591 76.2
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 0.0e+00 2370.5 1566 75.9
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 2365.9 1565 75.3
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 2362.8 1561 74.8
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 0.0e+00 2353.9 1597 74.0
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 2353.9 1563 75.3
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 0.0e+00 2348.2 1590 73.8
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 0.0e+00 2347.8 1571 75.4
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 0.0e+00 2335.5 1578 73.4
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 0.0e+00 2303.5 2044 60.2
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 0.0e+00 2292.3 1723 68.0
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2284.2 1983 63.1
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 0.0e+00 2283.1 1369 83.5
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 2278.8 1567 72.9
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 0.0e+00 2277.7 1445 77.6
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 0.0e+00 2201.0 1562 69.7
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2199.1 1509 74.0
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 2186.8 1567 69.3
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 2180.2 1568 70.0
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 0.0e+00 2176.7 1564 68.6
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 0.0e+00 2162.9 1563 68.1
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 2150.9 1559 68.7
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 2117.4 1563 67.6
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 2060.0 1561 66.2
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 0.0e+00 2055.8 1537 67.3
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2043.5 1236 83.6
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 0.0e+00 1972.6 1246 78.3
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1913.3 1244 77.9
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1905.6 1269 75.7
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1905.6 1269 75.7
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 0.0e+00 1884.0 1516 63.7
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 1855.9 1244 76.0
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1811.2 1397 66.4
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1728.4 1280 66.7
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1648.3 1106 75.1
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 0.0e+00 1633.2 1585 54.1
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1576.6 957 81.3
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 0.0e+00 1531.9 1607 51.1
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1517.7 972 77.2
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1507.7 937 82.2
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 0.0e+00 1463.7 1564 49.8
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1458.0 855 86.2
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 0.0e+00 1381.7 1674 46.4
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1345.1 858 79.1
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 0.0e+00 1338.2 1376 50.9
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1315.1 1052 65.3
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 0.0e+00 1301.2 873 74.3
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1280.8 992 68.5
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 3.0e-296 1022.7 667 74.1
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 1.6e-278 963.8 628 75.5
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 7.9e-265 918.3 556 82.7
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.5e-260 904.0 710 64.1
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 1.4e-253 880.9 550 75.5
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 2.0e-223 780.8 663 58.5
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.9e-218 764.2 664 58.3
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 8.9e-216 755.4 518 70.5
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 3.3e-194 683.7 668 53.6
Solyc08g067870.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 5.1e-163 580.1 321 83.2
Nitab4.5_0009600g0020 Nicotiana tabacum HOM05D003461 ORTHO05D004386 1.3e-161 575.5 321 82.2
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 4.8e-161 573.5 348 84.8
TPR.G27605 Trifolium pratense HOM05D003461 ORTHO05D004386 2.0e-159 568.2 419 66.8
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 7.6e-159 566.2 1088 33.9
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 7.9e-156 556.2 398 74.4
Peaxi162Scf00105g01315 Petunia axillaris HOM05D003461 ORTHO05D004386 5.0e-142 510.4 321 75.1
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 5.5e-141 506.9 486 55.6
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 2.3e-131 474.9 275 86.9
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 2.6e-114 418.3 276 72.5
VMungo1309G0474 Vigna mungo HOM05D003461 ORTHO05D004386 7.8e-87 327.0 195 74.9
Hund03002 Selenicereus undatus HOM05D003461 ORTHO05D004386 1.1e-67 263.5 144 81.2
VMungo0647G1896 Vigna mungo HOM05D003461 ORTHO05D004386 6.9e-67 260.8 148 79.1
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 5.1e-62 244.6 146 87.7
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 2.5e-53 215.7 117 92.3
CiPaw.07G217500 Carya illinoinensis HOM05D003461 ORTHO05D004386 7.4e-53 214.2 117 82.9
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 5.1e-46 191.4 107 90.7
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 3.3e-45 188.7 185 57.3
Cfa013212 Carpinus fangiana HOM05D003461 ORTHO05D004386 4.8e-44 184.9 122 71.3
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 5.5e-40 171.4 121 69.4
MBI14_g07933_MAGBIO Magnolia biondii HOM05D001400 ORTHO05D001795 1.1e-37 163.7 107 72.0
Sabra18G0035500 Salix brachista HOM05D003461 ORTHO05D004386 3.3e-37 162.2 139 64.0
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 3.7e-36 158.7 677 22.9
Lsat_1_v5_gn_9_70541 Lactuca sativa HOM05D003461 ORTHO05D004386 1.2e-34 153.7 140 59.3
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 2.7e-31 142.5 91 76.9
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 4.6e-31 141.7 89 77.5
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 1.0e-30 140.6 123 61.0
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.0e-30 140.6 90 76.7
SEGI_12849 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 7.4e-29 134.4 96 74.0
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 1.3e-28 133.7 134 57.5
Lsat_1_v5_gn_4_41661 Lactuca sativa HOM05D003461 ORTHO05D004386 3.7e-28 132.1 100 68.0
MBI03_g45443_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D004386 3.1e-27 129.0 86 70.9
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 5.3e-27 128.3 71 84.5
Lsat_1_v5_gn_9_53460 Lactuca sativa HOM05D003461 ORTHO05D004386 5.3e-27 128.3 100 70.0
Hma1.2p1_0175F.1_g077280 Hydrangea macrophylla HOM05D003461 ORTHO05D004386 1.1e-24 120.6 60 90.0
Lsat_1_v5_gn_0_34461 Lactuca sativa HOM05D003461 ORTHO05D004386 7.9e-23 114.4 78 71.8
VMungo1127G1644 Vigna mungo HOM05D003461 ORTHO05D004386 2.6e-21 109.4 64 76.6
Cpa.g.sc91.8 Carica papaya HOM05D003461 ORTHO05D004386 4.8e-20 105.1 51 88.2
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 2.4e-19 102.8 57 87.7
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 3.1e-19 102.4 57 86.0
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 1.2e-15 90.5 54 83.3
Lsat_1_v5_gn_9_113480 Lactuca sativa HOM05D003461 ORTHO05D004386 4.4e-13 82.0 63 68.3
Lsat_1_v5_gn_3_38460 Lactuca sativa HOM05D003461 ORTHO05D014082 2.4e-11 76.3 53 73.6
MBI14_g27819_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D022889 7.2e-08 64.7 52 61.5
EL10Ac2g02535 Beta vulgaris HOM05D003461 ORTHO05D089362 1.2e-07 63.9 163 33.7
MBI19_g30558_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D022889 4.7e-07 62.0 45 68.9
Cfa013213 Carpinus fangiana HOM05D003461 ORTHO05D004386 5.2e-06 58.5 27 96.3


User provided reference genes

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