Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 6.1e-121 437.6 234 100.0
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 9.3e-61 237.7 214 62.6
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 3.0e-59 232.6 214 60.7
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 2.4e-56 223.0 201 63.7
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 2.0e-55 219.9 197 63.5
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 2.9e-54 216.1 201 60.7
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.2e-53 212.2 203 62.6
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.6e-52 210.3 222 58.1
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 2.1e-52 209.9 211 56.9
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 2.3e-51 206.5 192 58.9
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.9e-50 203.4 202 58.4
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 2.5e-50 203.0 200 57.0
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 9.7e-50 201.1 196 57.7
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.8e-49 199.5 219 54.3
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 8.2e-49 198.0 220 55.0
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.8e-48 196.8 191 61.3
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 3.1e-48 196.1 216 57.9
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 5.3e-48 195.3 199 55.8
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.5e-47 193.7 186 62.4
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 2.0e-47 193.4 212 57.1
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 2.0e-47 193.4 218 52.8
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 2.6e-47 193.0 222 55.4
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 5.9e-47 191.8 171 63.7
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 1.0e-46 191.0 200 56.0
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 2.9e-46 189.5 204 55.9
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 3.2e-45 186.0 200 55.0
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 4.2e-45 185.7 188 53.2
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 5.5e-45 185.3 212 50.9
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 5.5e-45 185.3 189 56.6
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.2e-44 184.1 215 50.2
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.2e-44 184.1 190 56.8
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.7e-44 183.0 225 52.0
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 4.6e-44 182.2 163 65.0
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 4.6e-44 182.2 232 51.7
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 6.1e-44 181.8 192 53.6
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 1.4e-43 180.6 200 54.0
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.8e-43 180.3 216 49.1
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 2.3e-43 179.9 191 54.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 3.9e-43 179.1 190 53.2
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 3.9e-43 179.1 190 54.2
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 5.1e-43 178.7 191 53.9
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 6.7e-43 178.3 191 56.5
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 8.8e-43 177.9 220 49.1
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.0e-42 176.8 210 50.5
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.0e-42 176.8 191 55.0
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 2.6e-42 176.4 190 53.2
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 4.4e-42 175.6 190 52.6
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 4.4e-42 175.6 190 52.6
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 5.7e-42 175.3 189 54.0
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 9.7e-42 174.5 191 56.0
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 9.7e-42 174.5 226 47.8
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 9.7e-42 174.5 188 54.8
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.3e-41 174.1 194 53.1
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 1.3e-41 174.1 215 48.4
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.3e-41 174.1 190 52.1
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.7e-41 173.7 214 50.0
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 2.2e-41 173.3 210 52.4
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 6.3e-41 171.8 190 53.7
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 6.3e-41 171.8 188 54.3
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 1.1e-40 171.0 192 52.1
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 1.1e-40 171.0 193 54.4
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.4e-40 170.6 216 49.1
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.8e-40 170.2 192 51.6
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 2.4e-40 169.9 204 50.0
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 4.1e-40 169.1 211 50.2
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 4.1e-40 169.1 208 49.0
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 5.3e-40 168.7 197 52.3
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.4e-39 166.0 191 53.4
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.4e-39 166.0 198 51.5
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 7.7e-39 164.9 203 50.7
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 7.7e-39 164.9 215 46.5
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.3e-38 164.1 198 51.5
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.3e-38 164.1 198 49.0
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 1.7e-38 163.7 228 47.4
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.2e-38 163.3 198 51.5
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 2.2e-38 163.3 199 48.2
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 5.0e-38 162.2 198 51.5
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 6.5e-38 161.8 213 49.8
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 8.5e-38 161.4 221 48.4
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.1e-37 161.0 213 46.0
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.1e-37 161.0 194 47.4
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 1.1e-37 161.0 194 48.5
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.9e-37 160.2 197 50.3
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 2.5e-37 159.8 196 50.0
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.2e-37 159.1 192 52.1
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 5.5e-37 158.7 196 50.5
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 5.5e-37 158.7 204 46.6
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 7.2e-37 158.3 192 49.0
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.4e-37 157.9 212 43.4
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 9.4e-37 157.9 212 43.4
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.6e-36 157.1 219 44.7
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.1e-36 156.8 172 54.7
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 4.7e-36 155.6 196 49.0
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 6.1e-36 155.2 279 41.2
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 1.0e-35 154.5 248 42.7
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 1.0e-35 154.5 195 48.2
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.4e-35 154.1 233 44.6
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.8e-35 153.7 211 48.3
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.3e-35 153.3 235 45.5
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 3.0e-35 152.9 202 48.5
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 8.8e-35 151.4 199 47.7
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.1e-34 151.0 211 46.4
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.5e-34 150.6 207 46.9
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.5e-34 150.6 174 49.4
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 2.0e-34 150.2 194 47.9
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 5.3e-32 142.1 174 50.6
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 1.3e-30 137.5 195 48.2
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 1.7e-30 137.1 252 42.1
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 4.8e-25 119.0 224 40.2
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.5e-21 107.5 119 52.9
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 1.9e-21 107.1 286 31.1
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 9.4e-21 104.8 116 51.7
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 6.1e-20 102.1 220 35.9
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.8e-18 94.7 93 57.0
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.7e-17 94.0 185 36.8
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.2e-17 93.6 88 55.7
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 5.9e-15 85.5 72 62.5
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 1.0e-14 84.7 203 35.5
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 2.3e-14 83.6 102 47.1
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 5.2e-11 72.4 217 30.4
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 8.8e-11 71.6 58 67.2
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 1.7e-09 67.4 42 78.6
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 2.2e-09 67.0 158 36.7
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.2e-07 61.2 83 43.4


User provided reference genes

Program Settings