Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 6.8e-72 273.9 135 100.0
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 1.4e-53 213.0 138 77.5
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 1.4e-53 213.0 136 77.2
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 5.4e-53 211.1 136 75.0
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 7.0e-53 210.7 136 76.5
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 9.2e-53 210.3 138 76.1
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 1.2e-52 209.9 138 73.9
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 2.0e-52 209.1 134 76.1
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 2.7e-52 208.8 132 76.5
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 6.0e-52 207.6 143 72.7
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.0e-51 206.8 143 72.0
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 2.3e-51 205.7 136 75.7
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 3.0e-51 205.3 136 75.7
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 5.0e-51 204.5 135 74.1
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 6.6e-51 204.1 133 75.9
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 8.6e-51 203.8 136 72.8
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 8.6e-51 203.8 136 72.8
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 1.5e-50 203.0 135 74.1
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 1.5e-50 203.0 140 72.9
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 1.9e-50 202.6 135 73.3
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 2.5e-50 202.2 136 75.7
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 4.3e-50 201.4 118 81.4
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 4.3e-50 201.4 130 74.6
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 5.6e-50 201.1 135 75.6
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 5.6e-50 201.1 135 73.3
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 7.3e-50 200.7 136 76.5
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 9.5e-50 200.3 135 72.6
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 2.1e-49 199.1 136 72.8
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 2.1e-49 199.1 137 78.1
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 8.1e-49 197.2 140 70.0
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 1.1e-48 196.8 137 70.8
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 1.4e-48 196.4 122 73.8
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 1.4e-48 196.4 129 74.4
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 1.8e-48 196.1 134 70.9
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 1.8e-48 196.1 130 72.3
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 1.8e-48 196.1 136 70.6
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 3.1e-48 195.3 131 71.0
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 3.1e-48 195.3 137 71.5
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 3.1e-48 195.3 137 71.5
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 3.1e-48 195.3 133 70.7
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 4.0e-48 194.9 136 72.8
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 5.2e-48 194.5 138 73.9
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 5.2e-48 194.5 137 70.8
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 6.8e-48 194.1 118 74.6
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 8.9e-48 193.7 137 70.8
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 8.9e-48 193.7 130 74.6
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.2e-47 193.4 129 72.1
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 2.6e-47 192.2 127 72.4
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 2.6e-47 192.2 128 72.7
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 4.4e-47 191.4 130 76.2
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 5.8e-47 191.0 139 71.2
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 7.5e-47 190.7 129 71.3
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 7.5e-47 190.7 137 72.3
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 1.3e-46 189.9 139 70.5
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.3e-46 189.9 127 72.4
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 1.7e-46 189.5 133 72.2
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 1.7e-46 189.5 123 73.2
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 2.9e-46 188.7 133 69.2
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 2.9e-46 188.7 116 76.7
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 2.9e-46 188.7 137 68.6
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 3.7e-46 188.3 139 66.9
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 1.9e-45 186.0 138 71.0
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 1.9e-45 186.0 131 68.7
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 1.9e-45 186.0 130 75.4
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 1.9e-45 186.0 136 69.9
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 3.2e-45 185.3 131 67.9
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 9.2e-45 183.7 129 67.4
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 1.2e-44 183.3 129 69.8
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 1.6e-44 183.0 118 73.7
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 2.1e-44 182.6 137 65.7
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 2.7e-44 182.2 115 73.9
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 3.5e-44 181.8 131 67.2
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 6.0e-44 181.0 127 67.7
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 7.8e-44 180.6 133 66.2
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.7e-43 179.5 139 64.7
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 2.3e-43 179.1 135 68.1
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 3.9e-43 178.3 133 65.4
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 5.1e-43 177.9 133 65.4
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 5.1e-43 177.9 118 71.2
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 6.6e-43 177.6 118 71.2
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 6.6e-43 177.6 118 71.2
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 1.1e-42 176.8 136 67.6
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 1.5e-42 176.4 118 70.3
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 1.5e-42 176.4 118 70.3
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 1.9e-42 176.0 118 70.3
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 4.7e-41 171.4 135 67.4
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 4.7e-41 171.4 135 67.4
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 4.0e-40 168.3 118 66.9
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 1.7e-38 162.9 128 62.5
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 8.4e-38 160.6 192 46.4
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 1.9e-37 159.5 128 61.7
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 2.5e-34 149.1 89 76.4
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 2.0e-31 139.4 101 72.3
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 5.8e-31 137.9 109 58.7
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 1.4e-29 133.3 84 70.2
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 4.2e-29 131.7 138 49.3
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.3e-27 125.9 88 69.3
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.6e-25 119.8 148 50.0
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 4.0e-24 115.2 79 68.4
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 5.8e-23 111.3 129 49.6
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 9.9e-23 110.5 151 45.0
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 6.4e-22 107.8 74 71.6
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 8.4e-22 107.5 115 54.8
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 1.6e-17 93.2 137 41.6
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 2.3e-11 72.8 119 33.6
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 1.1e-10 70.5 118 34.7
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 5.6e-10 68.2 40 80.0
SHI07962 Sapria himalayana HOM05D007018 ORTHO05D008887 7.4e-10 67.8 40 75.0
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 7.4e-10 67.8 90 42.2
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 6.9e-08 61.2 126 34.1
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 1.2e-07 60.5 42 66.7
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 3.4e-07 58.9 79 40.5


User provided reference genes

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