Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 9.5e-136 486.9 253 100.0
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 2.3e-134 482.3 253 98.8
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.8e-105 386.3 256 79.3
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 1.1e-102 377.1 253 76.7
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 9.0e-102 374.0 255 76.9
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 5.8e-101 371.3 247 76.1
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 7.6e-101 370.9 254 73.6
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 4.2e-99 365.2 253 72.3
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.2e-98 363.6 253 71.9
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.8e-97 359.8 253 71.1
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 9.7e-96 354.0 256 72.3
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 5.3e-94 348.2 264 68.6
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 3.4e-93 345.5 257 69.3
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 7.6e-93 344.4 254 70.9
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 1.3e-92 343.6 259 71.0
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 6.5e-92 341.3 258 69.4
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 4.2e-91 338.6 254 69.3
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 4.2e-91 338.6 251 72.1
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 4.2e-91 338.6 253 66.4
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.6e-90 335.5 256 69.1
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 6.1e-90 334.7 253 68.4
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 1.8e-89 333.2 257 67.3
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 3.9e-89 332.0 256 69.1
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 6.7e-89 331.3 258 66.3
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.1e-88 330.5 256 69.1
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.1e-88 330.5 259 66.0
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 1.9e-88 329.7 276 64.5
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 3.3e-88 328.9 254 68.5
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 3.3e-88 328.9 256 68.8
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 3.3e-88 328.9 255 65.9
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 4.3e-88 328.6 253 68.0
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 5.7e-88 328.2 252 67.1
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 7.4e-88 327.8 256 65.6
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 1.6e-87 326.6 254 66.5
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.6e-87 326.6 250 68.0
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 2.2e-87 326.2 255 65.5
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 2.8e-87 325.9 252 67.5
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 8.2e-87 324.3 254 67.3
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 8.2e-87 324.3 254 65.4
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 1.4e-86 323.6 258 65.5
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 1.8e-86 323.2 255 65.9
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 4.1e-86 322.0 264 64.0
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 4.5e-85 318.5 259 64.1
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 1.0e-84 317.4 258 63.6
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.7e-84 316.6 255 65.9
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 2.9e-84 315.8 254 65.4
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 5.0e-84 315.1 258 64.0
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.4e-83 313.5 252 64.3
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 1.4e-83 313.5 283 61.1
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 2.5e-83 312.8 253 64.4
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 2.5e-83 312.8 255 62.7
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 9.4e-83 310.8 252 63.5
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 2.7e-82 309.3 252 63.1
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 2.7e-82 309.3 258 62.4
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 4.6e-82 308.5 259 64.1
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.8e-81 306.6 259 62.2
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 2.3e-81 306.2 254 64.6
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 5.1e-81 305.1 255 62.4
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.5e-80 303.5 253 63.6
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 3.3e-80 302.4 254 63.4
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 9.7e-80 300.8 267 61.0
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 2.2e-79 299.7 277 58.5
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 4.8e-79 298.5 258 61.2
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 8.2e-79 297.7 254 62.6
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 1.4e-78 297.0 265 58.5
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 1.8e-78 296.6 265 60.4
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 1.8e-78 296.6 259 59.5
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 2.4e-78 296.2 251 59.4
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 3.1e-78 295.8 261 62.5
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 6.9e-78 294.7 277 57.4
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 6.9e-78 294.7 213 68.1
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 9.1e-78 294.3 258 60.5
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.2e-77 293.9 255 62.4
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 1.2e-77 293.9 257 62.6
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 1.7e-76 290.0 256 60.2
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 6.5e-76 288.1 250 60.8
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 8.5e-76 287.7 256 59.8
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 1.1e-75 287.3 258 60.9
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 3.2e-75 285.8 263 58.6
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 5.5e-75 285.0 246 61.8
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 9.4e-75 284.3 253 59.7
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 1.2e-74 283.9 268 57.8
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 2.0e-72 276.6 250 58.0
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 7.0e-70 268.1 300 50.7
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 7.0e-70 268.1 258 57.8
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 1.6e-69 266.9 253 54.9
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 3.5e-69 265.8 259 56.4
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 3.5e-69 265.8 215 68.4
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 8.0e-66 254.6 252 54.4
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 2.3e-65 253.1 251 53.0
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 5.2e-65 251.9 261 53.3
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.5e-64 250.4 256 58.6
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.8e-63 246.1 259 53.3
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 3.5e-61 239.2 259 51.0
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.5e-59 233.0 193 64.8
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 9.4e-59 231.1 157 74.5
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 3.0e-57 226.1 245 49.0
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 2.3e-49 199.9 163 60.1
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 9.2e-46 188.0 251 44.6
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 6.8e-41 171.8 171 55.6
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 3.7e-31 139.4 248 39.9
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 4.1e-30 136.0 146 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 2.0e-29 133.7 238 37.8
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 2.7e-21 106.7 125 53.6
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 1.6e-18 97.4 92 51.1
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 3.6e-18 96.3 64 65.6
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 8.7e-12 75.1 220 30.0
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 1.1e-11 74.7 220 30.5
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.5e-08 64.3 134 36.6
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 3.8e-07 59.7 108 38.0
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 1.1e-06 58.2 43 60.5


User provided reference genes

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