Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 0.0e+00 1225.7 616 100.0
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.9e-262 909.1 611 76.4
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 1.0e-244 850.1 603 70.8
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 8.8e-244 847.0 603 71.1
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.0e-240 835.9 603 69.3
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.0e-228 797.0 613 67.4
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 4.0e-228 795.0 612 66.7
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 6.8e-228 794.3 614 66.8
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.5e-227 790.8 604 67.2
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.3e-223 780.0 613 66.2
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 5.0e-223 778.1 606 66.7
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 6.2e-221 771.2 609 65.2
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 6.0e-216 754.6 578 66.8
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.1e-214 750.4 604 65.4
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.6e-213 745.3 604 64.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 4.1e-209 731.9 617 63.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 5.4e-209 731.5 618 62.8
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.5e-208 728.8 607 62.4
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 7.8e-208 727.6 552 67.6
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 3.9e-207 725.3 670 59.1
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 7.3e-206 721.1 557 66.1
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 1.6e-205 719.9 614 58.8
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.8e-204 716.5 705 56.3
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.5e-203 713.4 605 61.8
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.9e-202 709.1 604 60.1
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.1e-200 703.0 673 57.4
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.0e-199 699.1 612 60.9
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.0e-199 699.1 603 58.9
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 4.3e-198 695.3 619 60.1
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 9.6e-198 694.1 619 57.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.1e-197 693.0 621 58.5
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.8e-196 689.9 607 58.8
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 5.3e-196 688.3 603 60.2
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 9.0e-196 687.6 603 60.2
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 2.6e-195 686.0 607 58.8
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 7.6e-195 684.5 598 58.2
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 9.9e-195 684.1 618 59.9
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.7e-194 683.3 610 59.2
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.7e-194 683.3 645 56.3
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 2.2e-194 682.9 613 58.7
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 4.9e-194 681.8 604 58.8
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 8.4e-194 681.0 621 56.2
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 5.4e-193 678.3 622 58.7
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.2e-192 677.2 642 56.5
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 2.7e-192 676.0 611 58.4
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.5e-192 675.6 584 60.6
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 2.3e-191 672.9 616 58.3
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 3.0e-191 672.5 606 58.6
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 3.9e-191 672.2 600 58.8
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 6.6e-191 671.4 645 55.5
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 8.7e-191 671.0 611 56.5
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.9e-190 669.8 586 59.0
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.6e-190 668.3 670 54.3
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 7.4e-190 667.9 613 56.8
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.1e-189 666.4 645 55.5
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 2.8e-189 666.0 626 54.8
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 3.6e-189 665.6 612 56.2
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 4.8e-189 665.2 612 56.2
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 4.8e-189 665.2 580 60.2
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 8.1e-189 664.5 670 54.5
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.1e-188 664.1 598 59.9
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.8e-188 663.3 610 58.0
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 3.1e-188 662.5 623 55.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.0e-187 659.8 603 58.9
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 2.6e-187 659.4 614 55.2
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 2.6e-187 659.4 564 61.2
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 3.4e-187 659.1 611 57.4
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 3.4e-187 659.1 598 58.2
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.4e-185 653.7 622 57.6
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 3.2e-185 652.5 617 54.8
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.6e-184 650.2 601 58.4
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 2.1e-184 649.8 610 55.9
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.0e-184 648.3 593 57.5
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.1e-182 644.0 577 59.3
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.1e-181 639.8 675 53.5
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 3.7e-181 639.0 601 57.1
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 4.8e-181 638.6 597 55.1
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 9.0e-180 634.4 603 55.4
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 2.6e-179 632.9 628 52.9
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 1.0e-178 630.9 596 56.0
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.7e-178 630.2 601 56.7
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.9e-178 629.4 611 55.6
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.1e-177 627.5 626 56.4
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 5.5e-177 625.2 617 56.2
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.1e-176 623.2 617 55.8
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 2.7e-176 622.9 586 57.5
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 4.6e-176 622.1 599 54.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 6.0e-176 621.7 620 54.5
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.3e-175 620.5 609 56.2
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.8e-175 620.2 621 55.1
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.0e-175 619.4 596 55.4
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.1e-174 617.5 578 55.5
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 5.7e-174 615.1 620 54.4
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 3.7e-173 612.5 599 54.6
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 5.3e-172 608.6 608 55.3
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 9.0e-172 607.8 621 54.4
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 2.0e-171 606.7 620 53.9
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.6e-171 606.3 567 56.3
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 7.6e-171 604.7 588 54.8
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.3e-170 604.0 614 52.6
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.8e-170 602.4 592 55.4
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 3.8e-170 602.4 613 52.5
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 3.8e-170 602.4 582 55.2
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 6.5e-170 601.7 609 54.5
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 8.5e-170 601.3 493 63.7
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.1e-169 600.9 601 53.2
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.9e-169 600.1 600 54.7
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 4.2e-169 599.0 607 53.0
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 5.5e-169 598.6 607 53.0
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.3e-167 594.0 608 56.4
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.3e-167 593.2 616 52.1
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 3.0e-167 592.8 703 48.4
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-165 587.4 629 52.0
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 6.5e-162 575.1 614 51.5
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.5e-161 573.2 577 55.3
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.2e-160 570.9 613 52.5
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 5.7e-158 562.0 609 51.2
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 9.7e-158 561.2 600 53.3
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.4e-156 557.4 605 50.1
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 5.0e-154 548.9 607 48.9
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 6.1e-152 542.0 479 58.5
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 8.8e-151 538.1 617 49.9
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 3.3e-150 536.2 600 49.2
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 4.8e-149 532.3 596 49.8
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.1e-148 531.2 594 51.2
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 7.0e-148 528.5 607 48.9
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 3.5e-147 526.2 598 48.5
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.3e-146 524.2 594 48.5
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 8.8e-143 511.5 479 55.1
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 7.5e-142 508.4 621 45.4
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 4.5e-139 499.2 620 47.1
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 5.9e-139 498.8 409 63.6
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 7.2e-137 491.9 397 65.2
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.0e-127 461.5 392 60.7
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 7.7e-123 445.3 500 51.0
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 2.2e-117 427.2 686 40.1
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 3.2e-116 423.3 635 42.5
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.2e-104 384.8 604 39.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 2.8e-104 383.6 596 40.4
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 9.8e-102 375.2 591 39.3
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.4e-100 370.5 611 38.5
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 5.4e-100 369.4 593 40.1
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.2e-94 351.7 590 38.6
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 3.4e-94 350.1 580 37.2
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 3.0e-90 337.0 595 38.0
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-89 335.1 606 38.1
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.5e-89 334.7 603 38.0
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.3e-89 333.6 668 35.2
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.2e-88 331.6 706 35.1
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.1e-88 330.9 523 39.8
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 5.1e-82 309.7 744 31.3
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 5.6e-81 306.2 431 41.5
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 5.3e-79 299.7 333 47.7
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.3e-72 278.5 503 35.4
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 8.1e-72 275.8 684 31.9
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 4.5e-70 270.0 469 37.1
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.3e-56 225.3 338 39.9
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.9e-52 211.5 151 69.5
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.9e-52 211.5 144 72.2
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.1e-49 202.2 235 51.5
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.8e-34 151.8 106 70.8
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 8.0e-27 126.3 116 58.6
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.7e-25 120.2 109 59.6
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 4.2e-20 104.0 143 42.0
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 8.3e-16 89.7 114 43.9
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 3.5e-14 84.3 137 41.6
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 2.9e-13 81.3 182 35.2
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.0e-10 71.2 60 56.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 9.2e-07 59.7 49 55.1
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 2.7e-06 58.2 72 44.4


User provided reference genes

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