Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.6e-109 399.4 207 100.0
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 3.4e-75 285.4 207 70.5
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 5.0e-74 281.6 208 70.7
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 3.9e-71 271.9 208 63.9
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 3.1e-68 262.3 209 64.6
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 3.1e-68 262.3 190 73.2
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 5.3e-68 261.5 196 67.9
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 3.5e-67 258.8 196 67.9
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 3.5e-67 258.8 208 61.1
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 5.9e-67 258.1 196 67.3
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 7.7e-67 257.7 190 72.1
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 3.8e-66 255.4 207 65.2
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 6.5e-66 254.6 194 63.4
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.5e-65 253.4 202 64.4
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 5.5e-65 251.5 154 74.0
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 2.1e-64 249.6 193 64.2
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 8.0e-64 247.7 205 60.0
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 8.8e-63 244.2 154 76.0
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 2.0e-62 243.0 154 72.1
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 2.0e-62 243.0 209 63.2
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 4.4e-62 241.9 154 72.7
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 3.7e-61 238.8 154 73.4
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.4e-60 236.9 191 58.1
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 3.1e-60 235.7 208 57.2
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 5.3e-60 235.0 199 57.8
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-59 233.8 194 62.9
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 2.7e-59 232.6 185 58.9
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 5.9e-59 231.5 154 65.6
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.3e-58 230.3 205 56.1
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.9e-58 229.2 189 60.8
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 3.8e-58 228.8 198 56.6
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 3.8e-58 228.8 198 61.6
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.5e-57 226.9 198 55.6
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.9e-57 226.5 193 56.5
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.9e-57 226.5 199 57.3
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 5.5e-57 224.9 199 56.3
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.6e-56 223.4 198 55.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.6e-56 223.4 154 68.8
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 8.0e-56 221.1 154 68.8
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 8.0e-56 221.1 199 56.3
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.4e-55 220.3 190 59.5
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.4e-55 220.3 203 55.7
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 1.8e-55 219.9 154 67.5
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 3.0e-55 219.2 203 52.7
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 4.0e-55 218.8 208 53.8
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 4.0e-55 218.8 188 56.9
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 4.0e-55 218.8 201 53.2
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 1.2e-54 217.2 195 53.3
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 1.2e-54 217.2 193 59.6
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.5e-54 216.9 195 54.9
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.6e-54 216.1 208 53.4
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.6e-54 216.1 154 64.3
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 3.4e-54 215.7 176 57.4
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 4.4e-54 215.3 200 54.0
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 5.7e-54 214.9 195 54.9
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 7.5e-54 214.5 203 53.7
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 9.8e-54 214.2 154 66.9
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 9.8e-54 214.2 214 56.5
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 1.3e-53 213.8 152 66.4
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.3e-53 213.8 196 51.5
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.7e-53 213.4 193 54.9
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.2e-53 213.0 199 53.8
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 2.2e-53 213.0 199 53.8
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.1e-52 210.7 213 50.2
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.4e-52 210.3 183 55.2
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.8e-52 209.9 154 64.9
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.4e-52 209.5 154 64.9
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 2.4e-52 209.5 154 64.9
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 2.4e-52 209.5 154 64.9
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 2.4e-52 209.5 154 64.9
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 3.1e-52 209.1 197 52.3
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 4.1e-52 208.8 154 64.3
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 9.1e-52 207.6 190 53.7
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 5.9e-51 204.9 154 66.2
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 2.3e-50 203.0 193 51.8
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 2.9e-50 202.6 210 54.3
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.1e-49 200.7 158 60.1
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 7.2e-49 198.0 200 51.5
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.2e-48 197.2 152 59.2
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 2.1e-48 196.4 152 61.2
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 6.8e-47 191.4 155 58.1
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 2.0e-46 189.9 192 51.6
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.7e-45 185.7 200 50.5
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 6.3e-45 184.9 125 67.2
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.1e-44 184.1 147 57.8
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.8e-44 183.3 147 57.8
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 9.2e-44 181.0 152 59.2
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 3.5e-43 179.1 162 57.4
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 2.3e-42 176.4 142 54.9
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-42 176.0 197 46.2
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 1.6e-40 170.2 178 51.7
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 3.6e-40 169.1 133 55.6
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 4.7e-40 168.7 143 53.1
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.5e-38 163.7 122 61.5
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.4e-36 157.1 124 58.9
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 1.6e-35 153.7 122 58.2
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.7e-35 152.9 124 58.1
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 8.6e-34 147.9 122 57.4
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 4.3e-33 145.6 192 44.3
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 3.6e-32 142.5 122 54.9
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 6.8e-31 138.3 97 66.0
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 4.4e-30 135.6 159 52.8
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-29 134.0 101 63.4
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 2.2e-29 133.3 102 62.7
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 2.9e-29 132.9 113 54.0
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 4.1e-28 129.0 130 57.7
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 7.0e-28 128.3 88 68.2
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 6.6e-26 121.7 83 68.7
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 8.1e-24 114.8 132 42.4
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-22 110.9 83 63.9
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 7.5e-22 108.2 109 46.8
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.9e-21 106.3 87 59.8
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.1e-20 104.4 111 49.5
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.9e-20 103.6 112 47.3
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 9.2e-20 101.3 142 46.5
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 2.1e-19 100.1 108 48.1
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 6.6e-18 95.1 130 36.9
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 6.6e-18 95.1 130 36.9
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 5.6e-17 92.0 68 63.2
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.2e-16 90.9 62 67.7
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 1.6e-16 90.5 106 42.5
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 6.4e-13 78.6 135 37.8
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 6.4e-13 78.6 108 40.7
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 6.4e-13 78.6 57 64.9
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 8.4e-13 78.2 68 51.5
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.4e-12 77.4 68 52.9
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.3e-10 70.9 79 46.8
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 1.7e-10 70.5 68 47.1
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 2.6e-06 56.6 109 32.1
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 2.6e-06 56.6 109 32.1
SHI10089 Sapria himalayana HOM05D000172 ORTHO05D369316 9.9e-06 54.7 118 32.2


User provided reference genes

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