Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 0.0e+00 1166.8 570 100.0
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 6.4e-281 970.3 567 82.4
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 5.4e-272 940.6 586 78.3
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 2.4e-267 925.2 570 77.7
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 1.6e-263 912.5 570 76.8
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 2.7e-263 911.8 567 77.4
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 3.5e-263 911.4 568 77.6
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 7.9e-263 910.2 570 77.2
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 3.9e-262 907.9 570 76.3
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.7e-260 901.4 569 75.7
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 3.7e-260 901.4 569 75.9
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 2.4e-259 898.7 568 75.2
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.2e-258 896.3 569 75.4
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 6.5e-257 890.6 562 76.3
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 1.9e-256 889.0 567 75.3
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 1.3e-254 882.9 569 74.5
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 2.3e-254 882.1 564 75.0
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 3.9e-254 881.3 572 74.5
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 4.3e-253 877.9 569 74.5
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.3e-252 876.3 572 74.0
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 6.5e-249 864.0 603 69.7
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 1.1e-248 863.2 567 73.4
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 9.3e-248 860.1 528 78.2
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.6e-247 859.4 570 73.7
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.1e-247 859.0 619 68.8
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 1.9e-245 852.4 568 73.4
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.1e-243 846.7 567 70.5
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.4e-243 846.3 570 72.5
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.4e-243 846.3 570 70.5
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 2.4e-243 845.5 567 72.1
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 4.1e-243 844.7 545 75.0
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 2.6e-242 842.0 569 70.7
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 4.5e-242 841.3 569 70.3
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 4.5e-242 841.3 569 70.1
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 4.2e-240 834.7 567 69.8
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 4.2e-240 834.7 567 69.5
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 4.2e-240 834.7 567 71.3
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 9.4e-240 833.6 567 69.8
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 6.1e-239 830.9 567 69.7
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 3.0e-238 828.6 567 70.0
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 3.9e-238 828.2 562 70.1
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 4.3e-237 824.7 568 68.8
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.7e-236 822.8 567 69.0
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 2.6e-234 815.5 567 69.0
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 3.4e-234 815.1 571 68.3
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 6.5e-233 810.8 572 71.0
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 1.4e-232 809.7 567 69.0
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 3.2e-232 808.5 567 70.5
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 1.2e-231 806.6 567 68.6
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 1.7e-228 796.2 529 73.3
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.1e-227 793.5 528 70.8
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 1.4e-227 793.1 576 69.4
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 2.0e-226 789.3 562 68.0
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 2.2e-225 785.8 570 66.3
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 2.5e-224 782.3 528 69.5
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 7.2e-224 780.8 569 66.6
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 7.2e-224 780.8 570 69.3
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 3.6e-223 778.5 568 66.5
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 4.7e-223 778.1 568 66.4
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 1.4e-222 776.5 565 67.8
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 4.4e-221 771.5 571 66.0
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.7e-220 769.6 570 67.9
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 2.2e-220 769.2 571 65.8
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 5.0e-217 758.1 505 70.7
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.9e-216 756.1 560 66.8
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 3.2e-216 755.4 563 65.9
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 9.4e-216 753.8 567 65.8
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 4.4e-213 745.0 525 70.1
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 9.8e-213 743.8 526 69.0
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 1.8e-211 739.6 565 64.8
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 7.0e-211 737.6 461 78.3
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.2e-207 726.9 530 69.1
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 9.8e-205 717.2 464 75.0
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.1e-203 713.8 594 61.1
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 7.0e-203 711.1 565 61.6
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 3.5e-202 708.8 528 66.1
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 3.3e-200 702.2 461 73.8
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 7.5e-197 691.0 541 64.1
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 5.9e-194 681.4 687 54.0
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 1.1e-192 677.2 496 67.9
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 3.4e-189 665.6 482 69.5
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 3.5e-178 629.0 568 55.3
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 1.5e-176 623.6 568 56.0
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 2.5e-176 622.9 601 55.1
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 4.7e-175 618.6 587 52.8
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 9.9e-173 610.9 482 63.7
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.1e-171 607.4 529 58.4
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.0e-169 600.9 529 58.0
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 6.0e-162 575.1 534 53.6
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 9.6e-152 541.2 406 66.5
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 1.8e-129 467.2 339 65.2
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 3.4e-125 453.0 319 68.0
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 1.3e-124 451.1 300 70.0
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 1.2e-122 444.5 320 69.4
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 1.1e-115 421.4 413 53.3
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 4.2e-115 419.5 317 64.7
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 7.9e-114 415.2 598 38.6
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 8.8e-113 411.8 284 66.2
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 2.4e-102 377.1 259 66.4
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 1.0e-100 371.7 271 67.2
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 9.4e-99 365.2 253 71.1
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 9.4e-99 365.2 593 34.6
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 1.6e-93 347.8 275 63.6
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 7.7e-93 345.5 265 66.0
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 2.0e-80 304.3 245 58.8
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 1.3e-76 291.6 204 68.1
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 1.8e-65 254.6 193 61.7
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 2.7e-61 240.7 214 58.9
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 1.7e-60 238.0 192 60.4
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 5.1e-60 236.5 157 75.2
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 7.3e-59 232.6 140 72.9
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 4.7e-58 229.9 690 27.2
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 5.1e-52 209.9 170 65.9
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 4.3e-51 206.8 185 57.3
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 6.9e-49 199.5 147 69.4
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 7.6e-40 169.5 168 52.4
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 1.5e-32 145.2 85 81.2
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 7.1e-30 136.3 104 61.5
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 1.8e-25 121.7 148 47.3
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.5e-19 102.1 120 46.7
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 3.4e-16 90.9 58 75.9
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 2.3e-12 78.2 89 46.1
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 8.8e-12 76.3 93 47.3
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 1.4e-09 68.9 43 67.4
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 5.5e-06 57.0 79 40.5
Psat5g200440 Pisum sativum HOM05D000228 ORTHO05D001545 5.5e-06 57.0 44 61.4


User provided reference genes

Program Settings