Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 7.1e-59 230.3 112 100.0
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.5e-53 212.6 112 90.2
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 5.8e-53 210.7 112 88.4
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 5.8e-53 210.7 112 88.4
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 7.6e-53 210.3 112 88.4
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 7.6e-53 210.3 112 88.4
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.0e-52 209.9 112 86.6
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.2e-52 208.8 112 87.5
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 2.9e-52 208.4 112 87.5
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.9e-52 208.4 112 87.5
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 2.9e-52 208.4 112 87.5
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 4.9e-52 207.6 112 89.3
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 8.4e-52 206.8 112 86.6
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 8.4e-52 206.8 112 86.6
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 1.1e-51 206.5 112 88.4
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 1.1e-51 206.5 112 87.5
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.9e-51 205.7 112 84.8
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.9e-51 205.7 112 85.7
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 1.9e-51 205.7 112 85.7
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 2.5e-51 205.3 112 85.7
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 2.5e-51 205.3 112 85.7
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 85.7
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 4.2e-51 204.5 112 85.7
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 86.6
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 7.1e-51 203.8 112 85.7
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 87.5
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 84.8
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.2e-50 203.0 112 83.9
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.2e-50 203.0 112 85.7
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 1.2e-50 203.0 112 84.8
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.2e-50 203.0 111 85.6
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.2e-50 203.0 112 84.8
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.6e-50 202.6 108 88.9
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 85.7
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.9
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 84.8
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 83.9
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 7.9e-50 200.3 112 83.9
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 83.9
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 83.9
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 82.1
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 84.8
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 83.9
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 83.0
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 82.1
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 83.0
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 3.0e-49 198.4 112 83.0
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 84.8
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 83.0
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 83.9
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 5.1e-49 197.6 112 85.7
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 82.1
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 8.7e-49 196.8 117 82.9
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.1e-48 196.4 111 82.9
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 82.1
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 80.4
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 81.2
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 82.1
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 80.4
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 80.4
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 80.4
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 80.4
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 80.4
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 80.4
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 7.4e-48 193.7 112 80.4
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 80.4
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.3e-47 193.0 112 79.5
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.6e-47 192.6 112 78.6
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 1.6e-47 192.6 112 80.4
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 1.6e-47 192.6 145 67.6
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 2.2e-47 192.2 111 81.1
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 2.8e-47 191.8 112 79.5
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 2.8e-47 191.8 112 80.4
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 4.8e-47 191.0 112 78.6
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 6.3e-47 190.7 112 78.6
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 6.3e-47 190.7 112 79.5
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.8e-46 189.1 127 74.8
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 3.1e-46 188.3 112 75.9
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.1e-46 188.0 112 75.0
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.1e-46 188.0 112 75.0
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 4.1e-46 188.0 112 75.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.3e-46 187.6 127 74.0
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.3e-46 187.6 127 74.0
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.2e-45 186.4 100 87.0
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 4.5e-45 184.5 109 78.0
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 7.6e-45 183.7 139 66.2
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.0e-44 183.3 109 77.1
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 5.0e-44 181.0 112 73.2
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 1.1e-43 179.9 98 84.7
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 3.2e-43 178.3 112 74.1
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 7.2e-43 177.2 106 79.2
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 1.2e-42 176.4 141 63.8
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 2.3e-41 172.2 99 81.8
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 6.7e-41 170.6 130 65.4
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 2.5e-40 168.7 98 80.6
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 2.8e-39 165.2 106 74.5
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 4.1e-38 161.4 111 65.8
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.2e-37 159.8 155 52.3
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 3.4e-37 158.3 96 76.0
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 2.5e-35 152.1 79 91.1
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 3.6e-34 148.3 88 73.9
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 1.4e-33 146.4 79 84.8
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.7e-33 144.1 108 60.2
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 3.3e-32 141.7 109 64.2
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 4.4e-32 141.4 86 79.1
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 4.8e-31 137.9 79 78.5
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.4e-30 135.6 98 65.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 9.1e-30 133.7 75 85.3
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 4.7e-26 121.3 108 52.8
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 3.0e-25 118.6 82 69.5
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.0e-24 115.9 109 55.0
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 4.4e-24 114.8 64 79.7
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 4.4e-24 114.8 69 79.7
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-23 113.2 64 78.1
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.2e-23 112.5 64 76.6
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.7e-23 111.7 64 76.6
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.8e-22 109.4 64 75.0
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.1e-22 108.6 64 75.0
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 7.0e-22 107.5 63 77.8
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 2.0e-21 105.9 64 68.8
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.0e-18 94.0 110 46.4
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.0e-18 94.0 110 46.4
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 2.3e-17 92.4 50 84.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 1.1e-14 83.6 157 39.5
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.0e-12 77.0 40 85.0
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 2.2e-12 75.9 45 77.8
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 5.2e-09 64.7 50 68.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 5.2e-09 64.7 50 68.0
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 2.8e-07 58.9 37 67.6
VMungo1080G0538 Vigna mungo HOM05D006200 ORTHO05D007569 2.4e-06 55.8 25 100.0


User provided reference genes

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