Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 8.8e-290 999.6 511 100.0
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.4e-239 832.8 517 83.8
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 6.2e-235 817.4 517 81.8
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.1e-234 816.6 509 83.7
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 5.6e-228 794.3 516 81.0
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.2e-225 786.6 523 79.5
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.5e-225 786.2 517 79.5
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.4e-223 779.6 518 79.3
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.4e-223 779.6 518 79.5
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.0e-221 773.5 518 78.8
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.0e-221 773.5 516 79.3
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 3.7e-219 765.0 517 78.1
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.4e-217 758.4 517 78.1
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.7e-216 756.1 516 76.9
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 4.2e-215 751.5 514 79.2
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.7e-214 748.8 511 77.9
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 3.3e-212 741.9 520 75.6
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.1e-210 736.9 518 75.5
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 6.9e-210 734.2 518 76.1
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 5.9e-209 731.1 518 76.8
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 2.7e-206 722.2 515 75.0
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.9e-205 718.4 516 73.8
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 1.1e-204 716.8 515 73.2
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 4.4e-204 714.9 517 73.3
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 5.7e-204 714.5 512 75.6
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.7e-203 713.0 516 74.6
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 2.2e-203 712.6 521 72.7
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 4.8e-203 711.4 516 74.4
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 3.1e-202 708.8 514 73.7
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 3.1e-202 708.8 513 72.1
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 6.9e-202 707.6 514 73.5
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.2e-201 706.8 515 73.6
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.9e-200 702.2 511 73.0
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 5.0e-200 701.4 518 73.0
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 8.5e-200 700.7 515 73.6
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 3.2e-199 698.7 513 73.1
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.2e-198 696.8 518 73.0
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.1e-198 696.0 515 73.4
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 4.7e-198 694.9 515 73.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 4.7e-198 694.9 512 72.3
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 7.9e-198 694.1 518 70.5
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 6.7e-197 691.0 514 72.4
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 8.8e-197 690.6 506 71.9
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.7e-196 688.0 511 73.0
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.7e-195 686.4 520 71.7
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 3.7e-195 685.3 521 71.6
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 6.3e-195 684.5 516 71.9
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 8.2e-195 684.1 513 71.7
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 8.2e-195 684.1 513 70.8
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 1.1e-194 683.7 516 71.7
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 1.8e-194 682.9 535 71.2
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.4e-194 682.6 523 71.7
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 4.1e-194 681.8 519 71.1
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 4.1e-194 681.8 519 71.1
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 5.3e-194 681.4 522 69.9
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.2e-193 680.2 518 72.6
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.2e-193 680.2 514 70.8
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.6e-193 679.1 520 70.0
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 2.6e-193 679.1 508 70.9
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 4.5e-193 678.3 507 70.6
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.7e-192 676.4 524 70.6
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 2.2e-192 676.0 508 70.5
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 6.5e-192 674.5 513 72.1
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 5.5e-191 671.4 519 71.5
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.2e-190 670.2 514 71.8
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.7e-190 668.3 519 71.1
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.1e-190 667.9 519 71.1
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.0e-190 667.5 518 71.4
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 8.0e-190 667.5 520 69.2
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 8.0e-190 667.5 524 70.6
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 8.0e-190 667.5 519 69.9
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.8e-189 666.4 513 69.2
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 5.2e-189 664.8 517 68.7
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.5e-188 663.3 512 68.8
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 2.7e-185 652.5 506 69.6
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 7.7e-185 651.0 516 69.8
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 2.2e-184 649.4 506 70.2
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 2.2e-184 649.4 517 70.0
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 2.5e-183 646.0 525 68.0
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.5e-183 646.0 504 69.2
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.2e-182 643.7 516 68.2
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 3.6e-182 642.1 522 68.0
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.6e-180 636.0 518 67.2
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 4.8e-179 631.7 505 68.9
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 6.3e-179 631.3 524 66.6
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 8.3e-179 630.9 528 65.7
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 1.1e-178 630.6 504 68.8
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.4e-178 630.2 505 68.9
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 2.4e-178 629.4 522 65.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 9.1e-178 627.5 519 66.5
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.6e-177 626.7 507 67.7
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.0e-177 626.3 464 71.3
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.7e-177 625.9 505 68.1
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.5e-177 625.5 471 71.8
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 2.2e-176 622.9 522 65.1
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.8e-174 615.9 514 67.7
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 6.8e-173 611.3 519 65.3
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 9.8e-172 607.4 494 67.6
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 8.3e-171 604.4 529 63.5
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.7e-169 599.4 521 64.5
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 3.8e-168 595.5 534 62.5
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.2e-166 590.5 514 66.1
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 2.3e-165 586.3 525 63.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 5.4e-162 575.1 464 68.1
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 3.6e-158 562.4 503 65.0
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 5.8e-156 555.1 526 60.1
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 6.8e-149 531.6 523 58.1
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 2.6e-148 529.6 523 58.3
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 2.2e-147 526.6 522 58.0
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 8.1e-142 508.1 483 60.7
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.1e-141 506.1 529 56.5
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 3.8e-131 472.6 526 53.2
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 8.4e-131 471.5 516 55.8
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.6e-129 467.2 544 52.4
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.8e-125 453.8 305 75.1
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 7.9e-113 411.8 514 49.8
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.1e-106 391.3 294 70.4
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.7e-97 360.1 512 48.6
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 7.4e-87 325.5 573 40.3
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 4.4e-63 246.5 284 51.1
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 3.3e-58 230.3 201 67.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 4.7e-57 226.5 342 43.0
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 3.7e-46 190.3 283 44.2
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 3.9e-27 127.1 99 70.7
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 3.3e-26 124.0 75 84.0
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.8e-24 118.2 482 26.3
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.6e-23 114.4 86 66.3
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 2.1e-20 104.8 509 26.3
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 6.9e-16 89.7 62 66.1
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 9.9e-15 85.9 63 66.7
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.4e-14 82.8 65 63.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.5e-12 77.4 191 32.5
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.3e-09 68.9 62 69.4
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 3.8e-06 57.4 407 22.6


User provided reference genes

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