Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.0e-56 223.0 103 100.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 1.3e-43 179.5 83 97.6
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.3e-43 179.5 83 97.6
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.9e-43 177.9 82 98.8
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 5.0e-43 177.6 82 98.8
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 5.0e-43 177.6 82 98.8
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 5.0e-43 177.6 82 98.8
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 5.0e-43 177.6 86 93.0
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 5.0e-43 177.6 82 98.8
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 5.0e-43 177.6 82 98.8
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.6e-43 176.8 82 97.6
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.6e-43 176.8 82 97.6
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 8.6e-43 176.8 82 97.6
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.1e-42 176.4 82 97.6
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.9e-42 175.6 82 97.6
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.9e-42 175.6 82 97.6
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.5e-42 175.3 82 96.3
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.5e-42 175.3 82 97.6
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 2.5e-42 175.3 82 96.3
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 2.5e-42 175.3 82 96.3
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 2.5e-42 175.3 82 96.3
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 3.3e-42 174.9 82 96.3
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 3.3e-42 174.9 82 95.1
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 5.6e-42 174.1 82 96.3
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 5.6e-42 174.1 82 95.1
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.6e-42 174.1 82 95.1
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.6e-42 174.1 82 95.1
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 5.6e-42 174.1 82 95.1
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 5.6e-42 174.1 82 96.3
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 5.6e-42 174.1 82 93.9
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 7.3e-42 173.7 82 96.3
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 9.5e-42 173.3 82 96.3
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 9.5e-42 173.3 86 93.0
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 9.5e-42 173.3 82 95.1
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.5e-42 173.3 82 95.1
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.5e-42 173.3 82 95.1
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 9.5e-42 173.3 82 96.3
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 9.5e-42 173.3 82 95.1
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 9.5e-42 173.3 83 94.0
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 96.3
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 95.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 96.3
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 95.1
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 95.1
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 95.1
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 96.3
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.2e-41 172.9 82 96.3
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.6e-41 172.6 82 95.1
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 95.1
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 95.1
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 95.1
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 93.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 95.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 95.1
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 95.1
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 2.1e-41 172.2 82 95.1
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 2.8e-41 171.8 82 95.1
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.8e-41 171.8 82 93.9
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.8e-41 171.8 82 93.9
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 2.8e-41 171.8 82 95.1
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 2.8e-41 171.8 82 95.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 2.8e-41 171.8 82 92.7
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 3.6e-41 171.4 82 95.1
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.7e-41 171.0 82 93.9
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 6.2e-41 170.6 80 95.0
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 6.2e-41 170.6 82 95.1
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 6.2e-41 170.6 82 93.9
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 8.0e-41 170.2 97 83.5
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 1.1e-40 169.9 81 93.8
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-40 169.9 81 93.8
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-40 169.9 81 93.8
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-40 169.9 82 93.9
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-40 169.9 82 93.9
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.1e-40 169.9 83 92.8
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.4e-40 169.5 82 93.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 1.4e-40 169.5 80 95.0
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 1.8e-40 169.1 82 91.5
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 2.3e-40 168.7 80 95.0
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.3e-40 168.7 82 92.7
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.1e-40 168.3 81 92.6
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 3.1e-40 168.3 80 95.0
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 4.0e-40 167.9 128 67.2
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 5.2e-40 167.5 82 91.5
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 6.8e-40 167.2 82 92.7
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.8e-40 167.2 82 91.5
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.8e-40 167.2 82 91.5
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 6.8e-40 167.2 82 92.7
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 6.8e-40 167.2 82 92.7
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 8.9e-40 166.8 82 91.5
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.2e-39 166.4 82 91.5
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.2e-39 166.4 82 91.5
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.2e-39 166.4 82 91.5
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.5e-39 166.0 82 91.5
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 2.0e-39 165.6 84 92.9
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 2.0e-39 165.6 82 90.2
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 2.6e-39 165.2 82 89.0
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 3.4e-39 164.9 82 91.5
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 3.4e-39 164.9 82 90.2
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 4.4e-39 164.5 83 88.0
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 7.5e-39 163.7 82 89.0
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 7.5e-39 163.7 82 90.2
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 7.5e-39 163.7 82 89.0
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 9.8e-39 163.3 86 88.4
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.3e-38 162.9 82 87.8
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.3e-38 162.9 82 87.8
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 2.2e-38 162.2 82 89.0
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 2.2e-38 162.2 82 89.0
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 2.2e-38 162.2 82 90.2
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 2.2e-38 162.2 82 90.2
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 2.2e-38 162.2 80 90.0
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 2.2e-38 162.2 82 90.2
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 3.7e-38 161.4 82 87.8
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 3.7e-38 161.4 82 87.8
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 3.7e-38 161.4 82 87.8
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 6.4e-38 160.6 82 89.0
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 6.4e-38 160.6 82 89.0
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 6.4e-38 160.6 82 86.6
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 8.3e-38 160.2 82 86.6
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.3e-38 160.2 82 86.6
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 2.4e-37 158.7 80 88.8
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 2.4e-37 158.7 82 87.8
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 3.2e-37 158.3 82 87.8
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 3.2e-37 158.3 82 87.8
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 3.2e-37 158.3 82 87.8
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 3.2e-37 158.3 82 87.8
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 3.2e-37 158.3 82 87.8
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.2e-37 158.3 82 84.1
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 2.7e-36 155.2 82 86.6
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.7e-36 155.2 81 84.0
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 3.5e-36 154.8 107 71.0
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 3.5e-36 154.8 82 86.6
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 4.6e-36 154.5 81 86.4
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.6e-36 154.5 113 68.1
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 7.8e-36 153.7 79 88.6
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.0e-35 153.3 94 78.7
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.7e-35 152.5 77 90.9
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.7e-35 152.5 77 90.9
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.3e-35 152.1 77 89.6
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 4.3e-34 147.9 82 79.3
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.6e-33 146.0 76 85.5
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-32 143.3 78 84.6
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.1e-32 143.3 82 76.8
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 4.0e-32 141.4 70 94.3
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 4.0e-32 141.4 68 94.1
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 2.9e-30 135.2 70 87.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 8.3e-30 133.7 70 84.3
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.1e-29 133.3 65 90.8
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 2.4e-29 132.1 66 92.4
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-28 129.8 109 60.6
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.7e-27 125.9 64 90.6
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 3.0e-27 125.2 60 95.0
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 8.6e-27 123.6 58 94.8
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.1e-24 116.7 93 64.5
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 5.2e-24 114.4 58 91.4
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.7e-20 102.1 59 79.7
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.1e-19 97.8 56 83.9
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 1.8e-16 89.4 47 83.0
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 3.1e-16 88.6 50 80.0
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 2.6e-15 85.5 47 85.1
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 4.6e-12 74.7 34 97.1
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 2.3e-11 72.4 34 94.1
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 2.5e-10 68.9 82 47.6
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 2.5e-10 68.9 82 47.6
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 5.6e-10 67.8 37 83.8
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 8.1e-09 63.9 34 85.3
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 4.5e-07 58.2 69 43.5


User provided reference genes

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