Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 6.1e-269 930.2 472 100.0
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 3.9e-215 751.5 433 82.9
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 8.4e-186 654.1 437 71.2
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 2.3e-183 646.0 436 71.1
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 6.9e-164 581.3 434 64.1
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 5.0e-162 575.1 437 65.0
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.4e-161 573.5 434 63.6
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.2e-161 572.4 435 62.8
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.7e-160 568.5 434 63.4
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 4.7e-160 568.5 437 64.3
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 1.0e-159 567.4 435 64.6
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 8.8e-159 564.3 436 63.1
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.1e-158 563.9 435 62.8
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 6.3e-157 558.1 435 62.3
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.5e-155 553.5 435 61.8
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 4.5e-155 552.0 470 59.1
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 2.2e-154 549.7 435 61.8
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.1e-153 547.4 468 59.6
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.1e-153 547.4 437 61.3
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 1.4e-153 547.0 439 61.3
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 4.2e-153 545.4 439 61.5
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 4.2e-153 545.4 440 60.9
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.2e-152 543.9 439 62.0
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 1.2e-152 543.9 446 62.8
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 3.0e-151 539.3 477 58.1
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 1.1e-150 537.3 435 60.5
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 4.4e-150 535.4 440 62.0
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 4.4e-150 535.4 446 59.6
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 4.8e-149 531.9 484 57.2
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 7.0e-148 528.1 479 58.0
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 7.7e-147 524.6 442 59.3
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 2.2e-146 523.1 442 60.4
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 3.8e-146 522.3 438 59.6
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 8.5e-146 521.2 429 59.0
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.5e-145 520.4 429 59.9
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 2.5e-145 519.6 442 59.5
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 5.5e-145 518.5 445 60.9
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.6e-144 516.9 444 59.7
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 5.2e-143 511.9 439 57.6
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 6.7e-143 511.5 478 55.4
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.2e-142 510.8 478 56.9
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.2e-142 510.8 447 58.2
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.2e-142 510.8 425 60.2
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.2e-142 510.8 448 57.4
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.5e-142 510.4 478 56.7
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.3e-142 509.2 438 57.5
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 3.3e-142 509.2 479 56.4
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 3.3e-142 509.2 479 56.4
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 4.4e-142 508.8 439 58.1
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 5.7e-142 508.4 478 56.5
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 9.7e-142 507.7 478 56.3
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.7e-141 506.9 429 58.7
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 6.3e-141 505.0 442 58.8
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 7.0e-140 501.5 428 58.2
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 1.6e-139 500.4 383 64.2
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.3e-138 497.3 384 62.2
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.8e-138 495.7 439 57.2
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 3.8e-138 495.7 425 57.6
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 8.5e-138 494.6 492 52.0
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 2.5e-137 493.0 480 54.2
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 7.2e-137 491.5 441 55.8
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 9.4e-137 491.1 462 56.1
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 1.1e-132 477.6 511 54.8
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.0e-131 473.4 392 58.9
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 2.7e-131 473.0 448 53.1
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 5.9e-131 471.9 421 56.8
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.0e-130 471.1 389 59.1
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 5.0e-130 468.8 389 60.2
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 7.2e-129 464.9 440 55.0
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 9.5e-129 464.5 395 58.2
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.6e-128 463.8 386 58.3
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 2.1e-128 463.4 434 53.9
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 2.8e-128 463.0 444 52.9
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 3.6e-128 462.6 440 55.0
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 1.5e-126 457.2 441 53.5
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 2.2e-125 453.4 388 57.2
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 4.9e-125 452.2 385 57.1
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 3.5e-123 446.0 378 56.9
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 5.6e-121 438.7 384 56.0
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 7.3e-121 438.3 444 51.6
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.2e-120 437.6 488 49.4
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.4e-119 434.1 387 56.1
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 6.8e-119 431.8 448 50.9
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 8.9e-119 431.4 438 52.5
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 2.0e-118 430.3 438 52.3
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 9.8e-118 427.9 359 58.2
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 1.3e-117 427.6 510 45.7
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 3.7e-117 426.0 417 48.7
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 3.7e-117 426.0 432 51.9
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 8.3e-117 424.9 439 52.2
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.9e-116 423.7 444 50.7
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 2.4e-116 423.3 440 50.7
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 9.2e-116 421.4 388 55.9
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 1.2e-115 421.0 450 51.1
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 2.7e-115 419.9 449 50.1
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 1.3e-114 417.5 383 53.5
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.7e-114 417.2 456 49.3
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 8.9e-111 404.8 434 50.5
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 3.2e-108 396.4 428 48.4
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 5.4e-108 395.6 332 57.2
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 5.4e-108 395.6 438 49.1
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 8.6e-106 388.3 454 47.6
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 4.4e-102 375.9 409 48.7
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 2.2e-101 373.6 352 58.2
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.2e-101 373.6 452 46.0
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 6.4e-101 372.1 438 48.4
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.6e-99 367.5 441 43.8
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.0e-98 364.8 401 49.1
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.6e-96 357.5 393 49.1
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 4.0e-95 352.8 421 45.4
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.4e-92 344.4 492 42.7
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 1.9e-92 344.0 292 59.6
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 7.8e-91 338.6 433 45.3
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 7.3e-89 332.0 445 43.4
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.1e-88 330.5 445 43.1
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 3.4e-86 323.2 358 49.2
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 6.4e-85 318.9 449 39.4
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.4e-84 317.8 433 39.5
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.1e-82 309.3 439 40.8
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 3.1e-71 273.5 417 37.6
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 4.2e-68 263.1 277 48.7
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.5e-65 253.8 396 36.4
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 3.7e-56 223.4 426 32.2
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 6.1e-51 206.1 296 42.9
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 7.2e-28 129.4 149 49.0
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.6e-27 128.3 137 43.1
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.9e-14 83.2 76 53.9
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 1.0e-13 82.4 56 75.0
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 6.8e-10 69.7 52 67.3
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 2.6e-09 67.8 52 73.1
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 2.8e-08 64.3 89 47.2
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 3.7e-08 63.9 68 51.5
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 1.2e-06 58.9 54 57.4
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 3.5e-06 57.4 39 74.4


User provided reference genes

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