Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 7.2e-125 450.7 239 100.0
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 1.6e-71 273.5 246 69.1
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 8.9e-51 204.5 266 55.6
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 1.3e-49 200.7 256 54.3
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 2.1e-44 183.3 244 50.0
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 1.1e-43 181.0 249 50.6
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 2.2e-41 173.3 250 48.0
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 1.4e-40 170.6 259 46.7
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 2.1e-39 166.8 248 48.8
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 2.1e-39 166.8 248 46.4
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 3.5e-39 166.0 244 49.2
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 7.8e-39 164.9 257 47.5
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 6.6e-38 161.8 245 47.8
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 2.8e-36 156.4 247 45.3
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 6.2e-36 155.2 257 45.5
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 1.8e-35 153.7 242 44.6
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.0e-34 150.2 266 43.6
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 3.8e-33 146.0 252 44.8
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.8e-33 146.0 253 43.9
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 4.9e-33 145.6 241 44.4
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 5.4e-32 142.1 241 43.6
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.2e-31 141.0 242 42.6
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 1.6e-31 140.6 148 55.4
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.1e-31 140.2 244 44.7
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.7e-31 139.8 247 45.7
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 4.6e-31 139.0 246 45.5
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.0e-31 138.7 243 42.4
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.0e-30 137.9 246 45.5
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 1.3e-30 137.5 242 41.3
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.1e-29 134.4 186 44.6
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 2.1e-28 130.2 240 42.5
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 2.1e-28 130.2 157 54.1
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.7e-28 129.4 241 41.1
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 4.0e-27 125.9 238 42.9
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 9.0e-27 124.8 238 41.2
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 1.5e-26 124.0 241 41.5
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.5e-26 124.0 241 41.5
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.0e-26 123.6 238 41.2
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 7.6e-26 121.7 252 44.8
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 2.2e-25 120.2 217 48.4
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.9e-25 119.8 238 40.3
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 1.1e-24 117.9 248 45.2
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 3.2e-24 116.3 242 37.2
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 9.3e-24 114.8 240 38.8
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.6e-23 114.0 258 34.5
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 7.9e-23 111.7 247 38.9
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 2.3e-22 110.2 241 37.8
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 5.1e-22 109.0 115 55.7
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.7e-22 108.6 235 38.3
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 6.7e-22 108.6 188 44.1
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 6.7e-22 108.6 256 36.3
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 8.7e-22 108.2 241 35.7
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 1.1e-21 107.8 259 37.5
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 1.5e-21 107.5 234 37.2
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 1.5e-21 107.5 134 49.3
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 1.5e-21 107.5 134 49.3
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.9e-21 107.1 223 40.8
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 2.5e-21 106.7 134 50.0
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 4.3e-21 105.9 239 37.2
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 5.6e-21 105.5 267 34.8
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 7.4e-21 105.1 162 46.3
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 2.1e-20 103.6 249 38.6
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 8.2e-20 101.7 272 35.7
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.1e-19 101.3 247 37.2
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 2.4e-19 100.1 160 41.9
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 5.3e-19 99.0 240 37.9
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 6.9e-19 98.6 149 47.7
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 6.9e-19 98.6 233 37.3
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 6.9e-19 98.6 233 37.3
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 2.6e-18 96.7 268 34.0
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.6e-18 96.7 243 37.0
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 2.6e-18 96.7 87 63.2
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 2.2e-17 93.6 235 34.5
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 2.9e-17 93.2 243 36.2
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 8.4e-17 91.7 151 43.0
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 8.4e-17 91.7 141 44.0
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.1e-16 91.3 139 45.3
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 1.4e-16 90.9 193 40.9
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 2.5e-16 90.1 244 36.1
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 2.5e-16 90.1 87 60.9
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 4.2e-16 89.4 259 35.9
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 5.5e-16 89.0 129 45.0
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 7.1e-16 88.6 217 40.6
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 7.1e-16 88.6 103 45.6
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.2e-15 87.8 79 59.5
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 1.6e-15 87.4 232 34.1
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 1.6e-15 87.4 77 62.3
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 2.1e-15 87.0 102 50.0
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 2.1e-15 87.0 155 41.3
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 6.0e-15 85.5 250 33.2
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 6.0e-15 85.5 111 51.4
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 1.0e-14 84.7 124 43.5
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.3e-14 84.3 235 35.7
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 1.8e-14 84.0 241 37.8
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 2.3e-14 83.6 253 33.6
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 3.0e-14 83.2 169 39.1
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 3.0e-14 83.2 106 50.9
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 3.0e-14 83.2 69 63.8
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 5.1e-14 82.4 250 35.6
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 5.1e-14 82.4 240 31.7
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 1.1e-13 81.3 117 49.6
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 1.9e-13 80.5 241 35.7
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 2.5e-13 80.1 240 35.4
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 3.3e-13 79.7 122 45.1
Glyma.18G077800 Glycine max HOM05D014115 ORTHO05D004704 1.3e-12 77.8 77 55.8
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.6e-12 77.4 124 41.9
Actinidia09789 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.8e-12 76.6 97 48.5
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 2.8e-12 76.6 111 48.6
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 4.8e-12 75.9 246 35.0
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 6.3e-12 75.5 125 41.6
Haze_09816 Corylus avellana HOM05D005849 ORTHO05D004704 8.2e-12 75.1 78 57.7
Nitab4.5_0004125g0020 Nicotiana tabacum HOM05D005849 ORTHO05D004704 8.2e-12 75.1 178 36.0
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 1.1e-11 74.7 77 50.6
Nitab4.5_0001701g0180 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.1e-11 74.7 166 35.5
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.1e-11 74.7 227 33.0
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 3.1e-11 73.2 258 34.1
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 4.1e-11 72.8 103 49.5
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 5.3e-11 72.4 232 34.5
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 9.0e-11 71.6 241 32.8
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 1.5e-10 70.9 101 43.6
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 2.0e-10 70.5 93 47.3
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 2.6e-10 70.1 89 47.2
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 3.4e-10 69.7 101 42.6
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 3.4e-10 69.7 101 42.6
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 3.4e-10 69.7 101 42.6
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 3.4e-10 69.7 236 30.1
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 4.5e-10 69.3 235 30.2
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 5.9e-10 68.9 246 29.7
Cfa020199 Carpinus fangiana HOM05D005849 ORTHO05D004704 5.9e-10 68.9 227 30.0
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 5.9e-10 68.9 239 31.8
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 5.9e-10 68.9 85 47.1
COL.COLO4_09821 Corchorus olitorius HOM05D005849 ORTHO05D004704 1.7e-09 67.4 203 33.5
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 2.2e-09 67.0 87 43.7
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 2.9e-09 66.6 209 29.7
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 3.8e-09 66.2 241 31.1
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 3.8e-09 66.2 86 45.3
Lalb_Chr15g0082031 Lupinus albus HOM05D005849 ORTHO05D004704 1.1e-08 64.7 112 42.0
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 1.4e-08 64.3 86 41.9
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 1.4e-08 64.3 92 42.4
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 1.9e-08 63.9 234 29.9
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 2.5e-08 63.5 86 45.3
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 2.5e-08 63.5 86 45.3
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 3.2e-08 63.2 82 47.6
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 3.2e-08 63.2 86 46.5
Eucgr.H00876 Eucalyptus grandis HOM05D005849 ORTHO05D004704 3.2e-08 63.2 226 31.9
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 9.4e-08 61.6 84 46.4
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 9.4e-08 61.6 86 45.3
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 9.4e-08 61.6 86 45.3
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 9.4e-08 61.6 234 28.2
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.2e-07 61.2 88 46.6
Glyma.02G300100 Glycine max HOM05D014115 ORTHO05D004704 4.6e-07 59.3 258 31.4
Glyma.14G013800 Glycine max HOM05D014115 ORTHO05D004704 6.1e-07 58.9 257 31.5
Psat5g169040 Pisum sativum HOM05D014115 ORTHO05D004704 6.1e-07 58.9 70 48.6
Lsat_1_v5_gn_5_122020 Lactuca sativa HOM05D005849 ORTHO05D004704 1.4e-06 57.8 238 31.9
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 2.3e-06 57.0 145 31.7
Dinv10326 Davidia involucrata HOM05D005849 ORTHO05D004704 3.9e-06 56.2 232 27.6
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 6.7e-06 55.5 232 28.9
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 6.7e-06 55.5 232 28.9
Medtr5g095710 Medicago truncatula HOM05D014115 ORTHO05D004704 6.7e-06 55.5 253 29.2
C04p43510 Brassica napus HOM05D009495 ORTHO05D004704 8.8e-06 55.1 237 28.7
Medtr3g058930 Medicago truncatula HOM05D014115 ORTHO05D004704 8.8e-06 55.1 146 32.2


User provided reference genes

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