Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 4.1e-90 334.7 173 100.0
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 2.2e-67 259.2 173 76.9
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 8.4e-67 257.3 169 78.1
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.9e-66 256.1 174 78.7
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.9e-66 256.1 172 78.5
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.2e-66 255.0 173 79.2
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.5e-65 251.9 162 79.6
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 6.0e-65 251.1 172 73.8
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 6.0e-65 251.1 166 76.5
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 1.0e-64 250.4 169 75.7
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 3.9e-64 248.4 174 73.6
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 8.7e-64 247.3 170 74.1
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 3.3e-63 245.4 169 74.0
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 7.4e-63 244.2 173 75.1
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 1.3e-62 243.4 173 73.4
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 1.6e-62 243.0 170 72.9
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.6e-62 243.0 161 79.5
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 2.8e-62 242.3 164 78.0
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 2.8e-62 242.3 173 73.4
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 3.7e-62 241.9 174 73.6
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 3.7e-62 241.9 168 74.4
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.8e-62 241.5 162 77.8
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 8.1e-62 240.7 173 72.3
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.1e-61 240.4 161 75.8
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 1.1e-61 240.4 161 75.8
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 6.9e-61 237.7 173 70.5
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.2e-60 236.9 162 75.9
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.2e-60 236.9 172 70.3
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 3.4e-60 235.3 174 72.4
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 4.5e-60 235.0 173 71.1
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 7.6e-60 234.2 160 76.2
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 7.6e-60 234.2 161 75.2
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 7.6e-60 234.2 161 75.2
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 7.6e-60 234.2 173 69.4
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.0e-59 233.8 172 70.3
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.9e-59 232.3 161 76.4
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 3.8e-59 231.9 172 69.8
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 3.8e-59 231.9 172 70.3
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 4.9e-59 231.5 161 74.5
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 8.4e-59 230.7 172 69.2
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 8.4e-59 230.7 170 69.4
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 8.4e-59 230.7 172 67.4
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.9e-58 229.6 162 75.3
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 2.5e-58 229.2 164 75.0
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 3.2e-58 228.8 176 68.8
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 4.2e-58 228.4 153 77.8
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 5.5e-58 228.0 172 66.9
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 7.1e-58 227.6 159 73.0
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 9.3e-58 227.3 153 77.1
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 2.7e-57 225.7 163 70.6
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 3.5e-57 225.3 162 71.0
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.8e-56 223.0 173 67.6
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 3.0e-56 222.2 173 68.2
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 6.7e-56 221.1 173 67.6
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 6.7e-56 221.1 163 72.4
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 6.7e-56 221.1 163 72.4
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 8.7e-56 220.7 167 68.3
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.5e-55 219.9 173 67.1
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.5e-55 219.9 163 71.8
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.5e-55 219.9 155 73.5
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.5e-55 219.2 166 69.9
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 4.3e-55 218.4 212 58.5
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 4.3e-55 218.4 164 70.1
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 7.4e-55 217.6 165 69.7
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 9.6e-55 217.2 162 71.0
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 1.3e-54 216.9 167 70.1
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.1e-54 216.1 161 66.5
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 2.1e-54 216.1 161 66.5
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.8e-54 215.7 161 70.8
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 4.8e-54 214.9 160 70.6
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 6.2e-54 214.5 160 70.6
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 6.2e-54 214.5 160 70.6
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 1.1e-53 213.8 175 63.4
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.8e-53 213.0 161 64.6
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 2.4e-53 212.6 146 76.0
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 6.9e-53 211.1 174 65.5
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 6.9e-53 211.1 169 64.5
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.2e-52 210.3 161 65.2
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.5e-52 209.9 162 69.1
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 3.4e-52 208.8 149 70.5
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 3.4e-52 208.8 171 64.3
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 5.8e-52 208.0 161 67.1
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 7.6e-52 207.6 237 51.9
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 7.6e-52 207.6 160 63.1
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.0e-51 207.2 150 73.3
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.0e-51 207.2 161 64.6
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 2.9e-51 205.7 160 65.6
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 2.9e-51 205.7 160 65.6
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 5.0e-51 204.9 140 74.3
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 6.5e-51 204.5 161 65.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.4e-50 203.4 155 65.8
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 5.5e-50 201.4 159 67.3
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.6e-49 199.9 149 66.4
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 2.1e-49 199.5 162 63.0
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 2.1e-49 199.5 140 75.7
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 6.1e-49 198.0 162 62.3
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.3e-48 196.8 147 70.7
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.0e-48 195.7 140 72.9
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 4.3e-47 191.8 136 75.7
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.3e-46 190.3 161 60.9
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 1.6e-46 189.9 155 66.5
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 2.9e-43 179.1 158 60.1
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 3.8e-43 178.7 137 67.2
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 8.5e-43 177.6 172 58.7
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 4.2e-42 175.3 144 61.8
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 4.2e-42 175.3 137 71.5
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 5.5e-42 174.9 147 57.1
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 9.4e-42 174.1 105 81.9
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.2e-41 173.7 147 57.8
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 2.8e-38 162.5 128 65.6
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.9e-35 152.5 89 80.9
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.9e-34 149.8 86 83.7
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 4.2e-34 148.7 103 73.8
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 3.9e-32 142.1 107 70.1
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.6e-31 139.4 79 83.5
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 1.2e-28 130.6 137 60.6
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 4.5e-28 128.6 122 62.3
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 3.8e-27 125.6 120 50.0
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 5.5e-26 121.7 81 75.3
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.0e-24 117.5 66 81.8
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.0e-24 115.9 85 74.1
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 6.7e-24 114.8 162 40.1
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 3.7e-22 109.0 114 57.0
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 1.6e-20 103.6 55 89.1
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 8.5e-19 97.8 54 88.9
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 2.5e-18 96.3 53 84.9
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.8e-16 87.8 71 69.0
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.8e-16 87.8 71 69.0
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 2.6e-15 86.3 58 72.4
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.8e-13 80.1 49 79.6
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 7.2e-10 68.2 82 37.8


User provided reference genes

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