Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 1.1e-162 576.6 303 100.0
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 1.3e-118 430.3 311 75.9
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 6.5e-99 364.8 314 67.8
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 2.3e-96 356.3 320 64.4
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.1e-93 345.9 316 64.6
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 7.0e-93 344.7 317 63.7
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 3.5e-92 342.4 322 62.7
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 3.8e-91 339.0 318 61.6
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 8.6e-91 337.8 318 60.1
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 7.3e-90 334.7 299 64.2
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 9.5e-90 334.3 313 62.0
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 2.1e-89 333.2 299 63.9
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 2.8e-89 332.8 310 62.3
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 6.1e-89 331.6 318 59.7
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 1.4e-88 330.5 318 60.1
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 2.3e-88 329.7 312 61.5
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 5.2e-88 328.6 320 62.2
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 5.2e-88 328.6 316 61.7
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 6.8e-88 328.2 314 61.1
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 1.5e-87 327.0 306 62.1
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.5e-87 327.0 312 61.5
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 2.6e-87 326.2 337 59.6
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 1.3e-86 323.9 314 60.5
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 3.7e-86 322.4 330 60.3
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 3.2e-85 319.3 305 62.3
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 4.1e-85 318.9 296 63.9
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 4.1e-85 318.9 296 63.9
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.2e-84 317.4 292 61.3
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 2.0e-84 316.6 291 62.2
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 2.0e-84 316.6 335 58.8
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 3.5e-84 315.8 277 64.6
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.8e-84 314.7 292 61.0
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 1.3e-83 313.9 323 60.4
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 3.0e-83 312.8 319 57.7
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 5.0e-83 312.0 317 60.3
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 6.6e-83 311.6 326 59.5
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 1.5e-82 310.5 306 59.2
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 3.3e-82 309.3 292 61.6
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 4.3e-82 308.9 292 60.6
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 5.6e-82 308.5 330 56.1
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 8.0e-81 304.7 339 55.5
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 1.4e-80 303.9 335 55.5
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 1.4e-80 303.9 343 55.4
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 2.3e-80 303.1 297 59.3
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.1e-80 302.8 313 58.5
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 3.1e-80 302.8 340 55.9
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 2.6e-79 299.7 336 54.2
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 3.4e-79 299.3 277 61.4
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 3.4e-79 299.3 326 55.8
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 7.5e-79 298.1 314 57.6
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 2.2e-78 296.6 346 54.6
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 1.4e-77 293.9 329 54.1
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 1.9e-77 293.5 349 53.6
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 7.0e-77 291.6 310 59.0
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 1.2e-76 290.8 327 55.7
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 3.5e-76 289.3 313 56.9
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.5e-76 289.3 312 57.1
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 7.8e-76 288.1 328 58.5
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 1.0e-75 287.7 346 53.5
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 1.3e-75 287.3 316 55.4
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 1.3e-75 287.3 300 57.7
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 5.0e-75 285.4 315 55.9
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 5.0e-75 285.4 216 71.3
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 1.9e-74 283.5 317 54.9
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 3.3e-74 282.7 311 55.9
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 5.6e-74 282.0 290 57.2
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 5.6e-74 282.0 319 56.1
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 1.6e-73 280.4 311 55.0
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 3.6e-73 279.3 315 55.9
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.7e-73 278.9 309 53.7
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 2.3e-72 276.6 315 54.3
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 3.1e-72 276.2 346 52.0
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 8.9e-72 274.6 336 52.4
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 2.6e-71 273.1 314 54.5
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 4.9e-70 268.9 314 53.5
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 4.9e-70 268.9 329 51.1
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 6.4e-70 268.5 318 53.8
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 1.1e-69 267.7 332 50.9
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.2e-69 266.2 289 55.4
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.2e-69 266.2 336 52.1
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 3.5e-68 262.7 342 50.9
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 3.5e-68 262.7 347 48.1
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 3.5e-68 262.7 335 51.6
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 1.3e-67 260.8 489 40.7
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 3.0e-67 259.6 312 53.5
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 8.6e-67 258.1 317 52.7
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 1.1e-66 257.7 322 51.2
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 1.5e-66 257.3 327 49.5
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 7.3e-66 255.0 343 49.0
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 1.6e-65 253.8 375 46.9
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 2.1e-65 253.4 306 53.6
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 3.6e-65 252.7 232 61.2
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 3.6e-65 252.7 305 54.1
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 6.2e-65 251.9 292 51.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 6.2e-65 251.9 260 55.8
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.1e-64 251.1 168 77.4
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 5.2e-64 248.8 277 54.5
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 5.2e-64 248.8 267 54.3
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 8.9e-64 248.1 315 50.5
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 2.0e-63 246.9 323 48.9
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 9.9e-63 244.6 218 62.4
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.9e-61 240.4 291 54.0
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 1.2e-60 237.7 269 52.4
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.2e-60 237.7 328 47.3
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 2.1e-60 236.9 295 51.9
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 2.3e-59 233.4 310 49.4
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 9.6e-58 228.0 311 48.6
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 2.8e-57 226.5 373 44.5
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 5.2e-56 222.2 215 61.9
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 6.9e-56 221.9 294 48.3
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 1.7e-54 217.2 249 55.8
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 4.9e-54 215.7 320 47.8
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 6.4e-54 215.3 260 55.0
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 3.5e-52 209.5 308 46.1
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 2.3e-51 206.8 322 47.8
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 1.4e-48 197.6 316 43.4
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 1.4e-48 197.6 156 68.6
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.2e-47 194.5 268 44.0
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 4.2e-45 186.0 210 52.9
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 5.4e-45 185.7 265 46.0
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 9.0e-40 168.3 112 77.7
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 2.0e-39 167.2 114 77.2
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 8.7e-35 151.8 212 48.1
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 2.5e-34 150.2 111 73.0
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 7.4e-34 148.7 152 54.6
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 6.9e-32 142.1 175 51.4
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 1.0e-30 138.3 112 66.1
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 3.8e-30 136.3 213 45.1
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 3.0e-27 126.7 202 42.6
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 8.2e-25 118.6 103 58.3
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 2.2e-22 110.5 81 66.7
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 2.7e-20 103.6 68 76.5
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 2.3e-19 100.5 201 36.3
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 1.9e-18 97.4 87 58.6
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 1.9e-18 97.4 312 32.1
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 3.4e-15 86.7 205 32.7
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 3.4e-15 86.7 205 32.7
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.0e-14 85.1 184 35.3
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 8.8e-11 72.0 50 74.0
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 1.8e-08 64.3 66 56.1
QL03p064635 Quercus lobata HOM05D005155 ORTHO05D006266 2.6e-07 60.5 60 58.3
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 1.7e-06 57.8 166 32.5


User provided reference genes

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