Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G057500 Manihot esculenta HOM05D005998 ORTHO05D007664 8.6e-152 540.8 390 100.0
Atru.chr6.3489 Acer truncatum HOM05D005998 ORTHO05D007664 2.1e-97 360.1 377 74.8
Ciclev10015543m.g Citrus clementina HOM05D005998 ORTHO05D007664 1.8e-93 347.1 387 72.1
AT3G07550 Arabidopsis thaliana HOM05D005998 ORTHO05D007664 2.7e-89 333.2 389 67.1
Thecc.01G205300 Theobroma cacao HOM05D005998 ORTHO05D007664 3.5e-89 332.8 386 68.4
Potri.017G056400 Populus trichocarpa HOM05D005998 ORTHO05D007664 1.3e-88 330.9 384 76.0
AL3G18890 Arabidopsis lyrata HOM05D005998 ORTHO05D007664 6.7e-88 328.6 388 66.8
TWI75G0247 Tripterygium wilfordii HOM05D005998 ORTHO05D007664 1.9e-87 327.0 386 64.5
TAR362G0769 Trochodendron aralioides HOM05D005998 ORTHO05D007664 3.3e-87 326.2 389 72.2
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 7.4e-87 325.1 380 67.6
Sp3g06470 Schrenkiella parvula HOM05D005998 ORTHO05D007664 2.2e-86 323.6 388 65.5
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 4.8e-86 322.4 388 51.8
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 1.5e-84 317.4 388 65.2
THA.LOC104819025 Tarenaya hassleriana HOM05D005998 ORTHO05D007664 5.9e-84 315.5 387 65.4
BraA05t22797Z Brassica rapa HOM05D005998 ORTHO05D007664 2.9e-83 313.2 383 59.5
Prupe.8G184400 Prunus persica HOM05D005998 ORTHO05D007664 2.9e-83 313.2 381 69.3
Sabra17G0050000 Salix brachista HOM05D005998 ORTHO05D007664 5.0e-83 312.4 384 73.7
RcHm_v2.0_Chr6g0281791 Rosa chinensis HOM05D005998 ORTHO05D007664 1.9e-82 310.5 373 72.4
PGR083G1807 Punica granatum HOM05D005998 ORTHO05D007664 1.2e-81 307.8 376 65.7
QL09p045684 Quercus lobata HOM05D005998 ORTHO05D007664 1.6e-81 307.4 390 65.4
CANSAT25G0419 Cannabis sativa HOM05D005998 ORTHO05D007664 7.9e-81 305.1 380 64.7
BolC5t34631H Brassica oleracea HOM05D005998 ORTHO05D007664 3.9e-80 302.8 379 68.3
C05p59770 Brassica napus HOM05D005998 ORTHO05D007664 5.1e-80 302.4 377 68.4
Gohir.D11G153100 Gossypium hirsutum HOM05D005998 ORTHO05D007664 6.7e-80 302.0 386 65.8
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 6.7e-80 302.0 386 65.8
Gohir.A11G144800 Gossypium hirsutum HOM05D005998 ORTHO05D007664 1.5e-79 300.8 386 65.8
Carub.0003s0710 Capsella rubella HOM05D005998 ORTHO05D007664 2.0e-79 300.4 382 62.6
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 9.7e-79 298.1 376 65.7
A05p40660 Brassica napus HOM05D005998 ORTHO05D007664 1.7e-78 297.4 383 58.0
BcaC05g29548 Brassica carinata HOM05D005998 ORTHO05D007664 1.1e-77 294.7 293 59.7
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 1.2e-76 291.2 376 48.9
MD05G1151800 Malus domestica HOM05D005998 ORTHO05D007664 4.5e-76 289.3 374 66.6
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 1.3e-75 287.7 371 62.5
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.4e-74 284.3 375 43.2
FvH4_2g17281 Fragaria vesca HOM05D005998 ORTHO05D007664 2.5e-74 283.5 373 69.4
Sabra17G0048300 Salix brachista HOM05D005998 ORTHO05D007664 2.5e-74 283.5 362 74.6
BcaC05g29549 Brassica carinata HOM05D005998 ORTHO05D007664 1.2e-73 281.2 289 65.1
Cc02_g30680 Coffea canephora HOM05D005998 ORTHO05D007664 1.6e-73 280.8 390 55.1
CSS0043446 Camellia sinensis var. sinensis HOM05D005998 ORTHO05D007664 4.7e-73 279.3 355 66.8
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 4.7e-73 279.3 379 59.4
PSO017G2023 Papaver somniferum HOM05D005998 ORTHO05D007664 8.8e-72 275.0 379 65.4
Aa31LG5G18090 Aethionema arabicum HOM05D005998 ORTHO05D007664 2.8e-70 270.0 385 60.0
Nitab4.5_0003952g0080 Nicotiana tabacum HOM05D005998 ORTHO05D007664 2.4e-69 266.9 388 56.7
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 1.2e-68 264.6 366 57.1
Eucgr.H00683 Eucalyptus grandis HOM05D005998 ORTHO05D007664 4.5e-68 262.7 385 63.6
Nitab4.5_0002641g0010 Nicotiana tabacum HOM05D005998 ORTHO05D007664 4.5e-68 262.7 388 56.2
Peaxi162Scf00372g00061 Petunia axillaris HOM05D005998 ORTHO05D007664 1.0e-67 261.5 388 54.6
CARHR082230 Cardamine hirsuta HOM05D005998 ORTHO05D007664 3.8e-67 259.6 380 59.2
PGSC0003DMG400020641 Solanum tuberosum HOM05D005998 ORTHO05D007664 5.0e-67 259.2 388 55.2
Solyc06g007680.1 Solanum lycopersicum HOM05D005998 ORTHO05D007664 2.1e-65 253.8 388 55.2
CAN.G181.48 Capsicum annuum HOM05D005998 ORTHO05D007664 3.6e-65 253.1 388 45.6
Duzib211G0440 Durio zibethinus HOM05D005998 ORTHO05D007664 4.7e-65 252.7 306 77.5
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 4.0e-64 249.6 379 44.6
Sopen06g002580 Solanum pennellii HOM05D005998 ORTHO05D007664 5.2e-64 249.2 388 53.9
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 1.3e-62 244.6 382 44.8
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 1.1e-61 241.5 262 67.9
Lsat_1_v5_gn_8_98580 Lactuca sativa HOM05D005998 ORTHO05D007664 5.5e-58 229.2 375 48.0
Hma1.2p1_1756F.1_g301020 Hydrangea macrophylla HOM05D005998 ORTHO05D007664 3.6e-57 226.5 388 43.6
PSO573G0042 Papaver somniferum HOM05D005998 ORTHO05D007664 5.2e-56 222.6 381 52.2
AUR62008051 Chenopodium quinoa HOM05D005998 ORTHO05D007664 9.8e-55 218.4 387 56.6
Lj3g0009731 Lotus japonicus HOM05D005998 ORTHO05D007664 1.7e-54 217.6 389 62.2
AUR62028626 Chenopodium quinoa HOM05D005998 ORTHO05D007664 1.2e-52 211.5 323 47.7
Haze_03601 Corylus avellana HOM05D005998 ORTHO05D007664 7.7e-52 208.8 397 44.1
Ca_23566_v3 Cicer arietinum L. HOM05D005998 ORTHO05D007664 5.0e-51 206.1 385 64.2
Glyma.07G060100 Glycine max HOM05D005998 ORTHO05D007664 1.9e-50 204.1 389 62.0
Psat4g158400 Pisum sativum HOM05D005998 ORTHO05D007664 2.5e-50 203.8 385 63.1
PSO017G6055 Papaver somniferum HOM05D005998 ORTHO05D007664 7.2e-50 202.2 313 55.0
Medtr8g028140 Medicago truncatula HOM05D005998 ORTHO05D007664 9.4e-50 201.8 385 63.1
PSO573G0007 Papaver somniferum HOM05D005998 ORTHO05D007664 1.0e-48 198.4 313 54.3
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 4.0e-48 196.4 389 62.2
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 1.8e-45 187.6 286 49.0
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 1.8e-45 187.6 286 49.0
Lsat_1_v5_gn_4_46380 Lactuca sativa HOM05D005998 ORTHO05D007664 1.6e-44 184.5 295 52.9
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 1.5e-42 177.9 286 48.3
HPP92_024394 Vanilla planifolia HOM05D005998 ORTHO05D007664 2.5e-42 177.2 284 52.8
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 1.4e-40 171.4 275 49.8
PSO017G3521 Papaver somniferum HOM05D005998 ORTHO05D007664 1.7e-38 164.5 294 44.9
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 3.2e-37 160.2 175 71.4
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 1.2e-36 158.3 290 42.4
RcHm_v2.0_Chr5g0064201 Rosa chinensis HOM05D005998 ORTHO05D007664 4.6e-36 156.4 177 54.8
ECA247G3308 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.6e-34 149.4 290 42.8
MD10G1146000 Malus domestica HOM05D005998 ORTHO05D007664 2.1e-33 147.5 281 54.8
Os11g0264200 Oryza sativa ssp. japonica HOM05D005998 ORTHO05D007664 2.0e-31 141.0 284 48.2
DCAR_000509 Daucus carota HOM05D005998 ORTHO05D007664 1.3e-30 138.3 178 63.5
Zm00001eb112540 Zea mays HOM05D005998 ORTHO05D007664 8.3e-30 135.6 291 47.1
PSO017G0196 Papaver somniferum HOM05D005998 ORTHO05D007664 3.2e-29 133.7 284 39.8
RcHm_v2.0_Chr7g0205731 Rosa chinensis HOM05D005998 ORTHO05D007664 3.2e-29 133.7 88 71.6
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 7.8e-28 129.0 299 32.8
Duzib138G0171 Durio zibethinus HOM05D005998 ORTHO05D007664 1.7e-27 127.9 89 67.4
ATR0743G036 Amborella trichopoda HOM05D005998 ORTHO05D007664 3.0e-27 127.1 276 44.6
ECA247G1983 Erigeron canadensis HOM05D005998 ORTHO05D007664 3.9e-27 126.7 308 32.5
PSO675G7594 Papaver somniferum HOM05D005998 ORTHO05D007664 6.6e-27 125.9 289 39.4
PSO541G3130 Papaver somniferum HOM05D005998 ORTHO05D007664 4.0e-24 116.7 293 38.9
CDE08G0319 Ceratophyllum demersum HOM05D005998 ORTHO05D007664 9.8e-23 112.1 168 47.6
Mapoly0166s0007 Marchantia polymorpha HOM05D005998 ORTHO05D007664 3.7e-22 110.2 284 41.5
ECA247G3549 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.1e-20 104.4 374 46.0
Rhsim13G0055600 Rhododendron simsii HOM05D005998 ORTHO05D007664 2.1e-20 104.4 378 25.4
PSO837G0060 Papaver somniferum HOM05D005998 ORTHO05D007664 4.6e-20 103.2 285 36.1
PSO675G8174 Papaver somniferum HOM05D005998 ORTHO05D007664 2.3e-19 100.9 286 38.5
PSO017G5443 Papaver somniferum HOM05D005998 ORTHO05D007664 8.6e-19 99.0 242 39.7
PSO218G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 8.6e-19 99.0 287 37.3
PSO340G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 8.6e-19 99.0 287 37.3
PSO675G6053 Papaver somniferum HOM05D005998 ORTHO05D007664 8.6e-19 99.0 287 37.3
PSO675G6885 Papaver somniferum HOM05D005998 ORTHO05D007664 8.6e-19 99.0 287 37.3
ECA232G4734 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.1e-18 98.6 290 37.9
ECA247G2923 Erigeron canadensis HOM05D005998 ORTHO05D003386 7.3e-18 95.9 272 44.9
Zm00001eb182340 Zea mays HOM05D005998 ORTHO05D015715 1.4e-16 91.7 88 51.1
PSO017G6716 Papaver somniferum HOM05D005998 ORTHO05D007664 2.3e-16 90.9 265 38.5
Zm00001eb048880 Zea mays HOM05D005998 ORTHO05D015715 6.8e-16 89.4 88 51.1
Oeu064702.2 Olea europaea HOM05D005998 ORTHO05D007664 6.4e-14 82.8 84 54.8
PSO017G0268 Papaver somniferum HOM05D005998 ORTHO05D007664 1.6e-12 78.2 143 38.5
PSO017G6639 Papaver somniferum HOM05D005998 ORTHO05D007664 1.6e-12 78.2 139 40.3
PSO017G2859 Papaver somniferum HOM05D005998 ORTHO05D007664 4.6e-12 76.6 229 41.9
PSO837G0015 Papaver somniferum HOM05D005998 ORTHO05D007664 7.8e-12 75.9 304 33.2
PSO017G4719 Papaver somniferum HOM05D005998 ORTHO05D007664 2.3e-11 74.3 141 34.8
ECA247G1593 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.1e-10 72.0 238 29.0
Migut.C00532 Erythranthe guttata HOM05D001905 ORTHO05D001820 1.1e-08 65.5 149 34.2
PSO675G5104 Papaver somniferum HOM05D005998 ORTHO05D007664 1.4e-08 65.1 208 37.0
Cfa017653 Carpinus fangiana HOM05D001905 ORTHO05D001820 8.9e-08 62.4 145 31.7
ECA247G1907 Erigeron canadensis HOM05D005998 ORTHO05D007664 8.9e-08 62.4 91 41.8
Hma1.2p1_0394F.1_g143320 Hydrangea macrophylla HOM05D001905 ORTHO05D001820 8.9e-08 62.4 152 28.9
PSO017G3446 Papaver somniferum HOM05D005998 ORTHO05D007664 8.9e-08 62.4 292 23.3
PSO017G7250 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-07 62.0 237 36.3
PSO541G0922 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-07 62.0 193 37.3
arahy.Tifrunner.gnm1.ann1.G6JM3G Arachis hypogaea HOM05D001905 ORTHO05D001820 3.4e-07 60.5 139 30.9
Lsat_1_v5_gn_1_22481 Lactuca sativa HOM05D001905 ORTHO05D001820 3.4e-07 60.5 145 30.3
Sed0026100 Sechium edule HOM05D001905 ORTHO05D001820 3.4e-07 60.5 141 31.9
Aqoxy5G01162 Aquilegia oxysepala HOM05D001905 ORTHO05D001820 4.4e-07 60.1 144 31.9
Lj9A193T20 Lonicera japonica HOM05D002125 ORTHO05D002105 4.4e-07 60.1 137 33.6
Nitab4.5_0006239g0020 Nicotiana tabacum HOM05D002125 ORTHO05D002105 4.4e-07 60.1 139 30.9
PSO170G2100 Papaver somniferum HOM05D001905 ORTHO05D001820 4.4e-07 60.1 141 31.2
Sed0020917 Sechium edule HOM05D001905 ORTHO05D001820 4.4e-07 60.1 138 30.4
arahy.Tifrunner.gnm1.ann1.MDG0XL Arachis hypogaea HOM05D001905 ORTHO05D001820 5.8e-07 59.7 138 31.2
Oeu054785.1 Olea europaea HOM05D001905 ORTHO05D001820 5.8e-07 59.7 141 31.9
PSO210G0464 Papaver somniferum HOM05D001905 ORTHO05D001820 5.8e-07 59.7 141 31.2
THA.LOC104825763 Tarenaya hassleriana HOM05D001905 ORTHO05D001820 5.8e-07 59.7 160 30.0
TWI36G1279 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 7.6e-07 59.3 148 31.1
vmacro08235 Vaccinium macrocarpon HOM05D001905 ORTHO05D001820 7.6e-07 59.3 139 32.4
Oeu020232.1 Olea europaea HOM05D001905 ORTHO05D001820 9.9e-07 58.9 140 31.4
Hund03802 Selenicereus undatus HOM05D002125 ORTHO05D002105 9.9e-07 58.9 283 25.1
SEGI_14723 Sequoiadendron giganteum HOM05D001905 ORTHO05D001820 9.9e-07 58.9 309 22.3
Lj4C64T9 Lonicera japonica HOM05D001905 ORTHO05D001820 1.3e-06 58.5 141 32.6
Potri.005G141800 Populus trichocarpa HOM05D001905 ORTHO05D001820 1.7e-06 58.2 153 30.1
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 1.7e-06 58.2 164 30.5
Ciclev10025355m.g Citrus clementina HOM05D001905 ORTHO05D001820 2.2e-06 57.8 138 31.2
Lalb_Chr05g0213421 Lupinus albus HOM05D001905 ORTHO05D001820 2.2e-06 57.8 150 30.0
Nitab4.5_0003497g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 2.2e-06 57.8 139 29.5
Potri.002G123100 Populus trichocarpa HOM05D001905 ORTHO05D001820 2.2e-06 57.8 138 31.2
CARHR159150 Cardamine hirsuta HOM05D001905 ORTHO05D001820 2.9e-06 57.4 139 30.2
QL02p003969 Quercus lobata HOM05D001905 ORTHO05D001820 2.9e-06 57.4 141 29.8
TWI36G1711 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 2.9e-06 57.4 150 31.3
Actinidia22657 Actinidia chinensis HOM05D001905 ORTHO05D001820 3.8e-06 57.0 141 30.5
SEGI_26861 Sequoiadendron giganteum HOM05D002125 ORTHO05D002105 3.8e-06 57.0 131 27.5
Aqoxy6G02895 Aquilegia oxysepala HOM05D001905 ORTHO05D001820 4.9e-06 56.6 142 32.4
Ciclev10000831m.g Citrus clementina HOM05D001905 ORTHO05D001820 4.9e-06 56.6 141 32.6
Dinv39270 Davidia involucrata HOM05D001905 ORTHO05D001820 4.9e-06 56.6 155 30.3
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 4.9e-06 56.6 143 32.2
TWI56G0531 Tripterygium wilfordii HOM05D001905 ORTHO05D001820 4.9e-06 56.6 150 32.0
Cpa.g.sc21.154 Carica papaya HOM05D001905 ORTHO05D001820 6.4e-06 56.2 138 33.3
Atru.chr3.257 Acer truncatum HOM05D001905 ORTHO05D001820 8.4e-06 55.8 138 31.2
MSTRG.2859 Avicennia marina HOM05D001905 ORTHO05D001820 8.4e-06 55.8 160 28.8
Cfa018056 Carpinus fangiana HOM05D001905 ORTHO05D001820 8.4e-06 55.8 141 30.5
DCAR_021477 Daucus carota HOM05D001905 ORTHO05D001820 8.4e-06 55.8 162 29.0
Os12g0526600 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D009037 8.4e-06 55.8 157 31.2
PSO017G7319 Papaver somniferum HOM05D005998 ORTHO05D007664 8.4e-06 55.8 86 37.2
Prupe.1G430700 Prunus persica HOM05D001905 ORTHO05D001820 8.4e-06 55.8 155 29.7


User provided reference genes

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