Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 2.9e-91 338.6 173 100.0
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 5.3e-37 158.3 123 72.4
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 2.2e-35 152.9 175 55.4
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.2e-33 147.1 173 53.8
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 2.1e-33 146.4 172 52.3
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 7.9e-33 144.4 171 52.6
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.8e-32 143.3 166 53.6
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.8e-32 143.3 171 52.0
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.0e-32 142.5 171 52.0
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 1.3e-30 137.1 176 47.7
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.3e-30 137.1 167 48.5
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.2e-30 136.3 178 50.0
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 4.1e-29 132.1 175 48.6
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 9.1e-29 131.0 175 48.6
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 5.9e-28 128.3 179 48.0
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.8e-27 125.6 180 47.2
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.0e-27 125.2 180 47.2
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 6.5e-27 124.8 180 47.2
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 6.5e-27 124.8 178 47.8
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 6.5e-27 124.8 163 41.7
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 8.5e-27 124.4 177 49.7
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.5e-27 124.4 181 46.4
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.1e-26 124.0 176 48.3
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 1.5e-26 123.6 166 49.4
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.5e-26 122.9 167 47.9
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.5e-26 122.9 167 47.9
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 2.5e-26 122.9 171 44.4
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 4.2e-26 122.1 173 45.1
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 4.2e-26 122.1 169 43.8
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.2e-26 122.1 163 50.3
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 9.4e-26 120.9 167 46.1
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 2.7e-25 119.4 177 47.5
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.1e-25 118.2 177 44.1
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 6.1e-25 118.2 166 48.8
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 1.0e-24 117.5 162 43.2
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.8e-24 116.7 163 46.6
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.0e-24 115.5 179 45.3
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 5.2e-24 115.2 165 40.6
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 1.1e-23 114.0 161 42.9
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.0e-23 113.2 164 42.1
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 2.0e-23 113.2 163 46.6
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 3.3e-23 112.5 178 44.4
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 4.4e-23 112.1 164 45.7
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 4.4e-23 112.1 171 42.7
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.4e-23 112.1 165 44.8
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.7e-23 111.7 161 46.0
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 9.7e-23 110.9 180 44.4
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 9.7e-23 110.9 168 43.5
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 1.7e-22 110.2 171 43.9
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 2.8e-22 109.4 176 42.6
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 3.7e-22 109.0 163 39.9
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 3.7e-22 109.0 181 40.3
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 8.2e-22 107.8 170 40.6
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 2.4e-21 106.3 166 43.4
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 4.1e-21 105.5 158 44.3
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 5.3e-21 105.1 169 45.6
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 9.1e-21 104.4 165 43.6
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.2e-20 104.0 160 41.9
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 1.6e-20 103.6 168 39.3
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 1.6e-20 103.6 168 44.0
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 4.5e-20 102.1 170 38.8
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 7.7e-20 101.3 167 40.1
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.7e-20 101.3 162 38.9
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.7e-20 101.3 162 38.9
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 1.0e-19 100.9 166 39.2
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.3e-19 100.5 162 38.9
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 1.7e-19 100.1 168 44.0
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 2.2e-19 99.8 166 38.0
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.2e-19 99.8 162 38.3
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.5e-18 97.1 167 40.1
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 1.5e-18 97.1 150 40.0
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 3.2e-18 95.9 162 39.5
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.2e-18 95.5 181 39.8
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 4.2e-18 95.5 169 40.8
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 5.5e-18 95.1 174 39.1
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 7.2e-18 94.7 158 40.5
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 9.4e-18 94.4 127 41.7
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 9.4e-18 94.4 161 41.6
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.6e-17 93.6 161 41.0
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 3.6e-17 92.4 155 39.4
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.1e-17 91.7 168 42.9
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 6.1e-17 91.7 148 39.2
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.0e-16 90.9 128 45.3
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.0e-16 90.9 160 40.0
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 1.8e-16 90.1 180 35.6
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.3e-16 89.7 174 39.7
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.3e-16 89.7 116 50.0
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 3.0e-16 89.4 179 36.9
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 6.8e-16 88.2 168 36.9
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-15 87.0 116 44.0
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 2.0e-15 86.7 114 46.5
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 2.6e-15 86.3 167 37.1
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 2.6e-15 86.3 173 37.0
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 4.4e-15 85.5 163 36.8
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 4.4e-15 85.5 184 32.1
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 7.5e-15 84.7 164 36.0
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 9.8e-15 84.3 161 34.8
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 2.2e-14 83.2 157 40.1
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 2.2e-14 83.2 165 32.7
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 2.8e-14 82.8 165 39.4
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 3.7e-14 82.4 157 36.3
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 4.8e-14 82.0 165 35.2
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.3e-14 81.3 170 38.2
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.4e-13 80.5 157 39.5
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 1.8e-13 80.1 154 36.4
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 2.4e-13 79.7 157 35.0
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 3.1e-13 79.3 118 46.6
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 7.0e-13 78.2 154 36.4
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 7.0e-13 78.2 159 35.8
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 9.1e-13 77.8 159 36.5
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 3.5e-12 75.9 157 37.6
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 4.5e-12 75.5 135 39.3
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 4.5e-12 75.5 153 35.9
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 4.5e-12 75.5 156 36.5
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 5.9e-12 75.1 164 31.7
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 7.7e-12 74.7 154 35.1
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 7.7e-12 74.7 154 35.1
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 7.7e-12 74.7 120 42.5
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.0e-11 74.3 108 42.6
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 1.0e-11 74.3 154 33.1
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.3e-11 73.9 165 35.8
QL10p006175 Quercus lobata HOM05D000022 ORTHO05D006148 2.2e-11 73.2 94 50.0
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 2.9e-11 72.8 174 33.9
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 3.8e-11 72.4 104 41.3
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 3.8e-11 72.4 160 32.5
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 8.5e-11 71.2 164 34.1
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.5e-10 69.7 107 43.0
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 4.2e-10 68.9 53 66.0
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 5.5e-10 68.6 125 37.6
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 5.5e-10 68.6 125 37.6
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 9.4e-10 67.8 154 33.8
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 9.4e-10 67.8 154 33.8
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 9.4e-10 67.8 104 43.3
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 1.2e-09 67.4 125 37.6
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 2.7e-09 66.2 155 32.3
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 6.1e-09 65.1 118 33.9
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.0e-08 64.3 166 27.7
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 1.8e-08 63.5 154 31.8
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 1.8e-08 63.5 154 31.8
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 2.3e-08 63.2 170 28.2
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 3.0e-08 62.8 154 32.5
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 6.8e-08 61.6 157 31.8
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 6.8e-08 61.6 157 31.8
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.8e-06 56.2 168 29.8
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.7e-06 55.8 189 30.7
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 4.9e-06 55.5 141 34.8


User provided reference genes

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