Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 3.9e-211 738.0 412 100.0
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 5.4e-128 461.8 414 66.4
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.2e-87 327.8 425 54.4
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 9.6e-85 318.2 430 53.3
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 1.2e-84 317.8 447 50.3
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.6e-82 310.1 454 50.2
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 3.2e-80 303.1 421 50.6
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 7.1e-80 302.0 409 52.1
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 1.9e-77 293.9 450 52.2
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 6.4e-73 278.9 441 50.6
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.4e-72 277.7 441 47.2
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 9.6e-69 265.0 445 46.5
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.0e-66 257.3 438 47.0
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 9.6e-61 238.4 440 46.8
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.4e-59 233.8 437 41.0
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.2e-58 231.5 444 42.3
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.4e-58 229.9 445 42.9
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.7e-57 227.6 477 42.1
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.8e-57 226.5 445 42.5
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 6.5e-57 225.7 421 46.1
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 8.4e-57 225.3 438 43.2
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 3.5e-55 219.9 456 42.3
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 3.5e-55 219.9 446 40.6
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 7.9e-55 218.8 422 43.4
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.0e-54 218.4 465 42.2
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 3.0e-54 216.9 446 44.4
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 5.1e-54 216.1 489 38.2
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.5e-53 214.5 411 44.0
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.9e-53 214.2 417 40.5
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 2.5e-53 213.8 394 41.9
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.7e-52 209.9 418 43.5
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.2e-50 204.9 443 42.7
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 4.2e-48 196.4 425 40.9
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 5.5e-48 196.1 436 40.8
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 5.5e-48 196.1 436 40.8
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 7.9e-47 192.2 427 39.8
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.0e-46 191.8 458 40.6
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.0e-46 191.8 414 40.1
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.0e-46 190.3 429 41.0
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.1e-45 188.3 400 41.5
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 4.3e-45 186.4 396 38.4
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.3e-44 184.9 511 37.2
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 6.3e-44 182.6 439 39.0
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.4e-43 181.4 418 41.4
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 2.0e-42 177.6 424 40.1
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.0e-42 177.6 458 40.8
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 3.4e-42 176.8 509 36.3
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 5.9e-42 176.0 139 65.5
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 7.7e-42 175.6 472 36.2
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.0e-41 175.3 396 39.1
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 3.8e-41 173.3 437 40.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.1e-40 171.8 337 38.0
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.5e-40 170.6 588 35.5
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 3.2e-40 170.2 434 39.4
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 3.2e-40 170.2 237 50.6
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 3.2e-40 170.2 422 38.6
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 1.2e-39 168.3 399 40.4
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 2.3e-38 164.1 597 35.0
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-38 163.3 185 54.6
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 8.8e-38 162.2 420 35.2
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 1.5e-37 161.4 435 38.4
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 1.5e-37 161.4 435 38.4
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.3e-37 160.2 415 38.1
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.3e-37 160.2 415 38.1
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 4.3e-37 159.8 179 55.9
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 5.7e-37 159.5 257 47.9
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 7.4e-37 159.1 435 38.2
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 1.7e-36 157.9 426 35.9
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 1.7e-36 157.9 428 37.6
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.2e-36 157.5 490 34.7
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 2.8e-36 157.1 326 39.6
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 3.7e-36 156.8 587 34.4
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.3e-36 156.0 587 34.2
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 2.4e-35 154.1 424 38.9
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.1e-35 153.7 428 37.6
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.3e-35 152.9 415 36.1
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.9e-35 152.5 594 34.3
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 3.8e-33 146.7 418 37.1
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.9e-32 144.4 418 36.1
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 2.5e-32 144.1 452 35.6
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.2e-32 143.7 436 36.9
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 7.2e-32 142.5 272 41.2
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 7.2e-32 142.5 408 36.0
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 1.6e-31 141.4 449 35.9
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 4.7e-31 139.8 250 42.4
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 7.9e-31 139.0 406 35.5
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.0e-30 138.7 120 59.2
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.8e-30 137.9 429 35.4
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 2.3e-30 137.5 400 34.8
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.3e-30 137.5 417 36.9
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 3.0e-30 137.1 442 32.8
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.1e-29 135.2 315 37.5
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.5e-29 134.8 422 34.1
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.5e-29 134.8 397 34.8
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 2.0e-29 134.4 406 36.0
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.6e-29 134.0 326 40.2
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 4.4e-29 133.3 401 34.9
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.8e-28 129.8 391 35.0
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.8e-28 129.8 403 35.0
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.4e-27 128.3 423 32.2
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.3e-27 126.3 125 56.0
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 5.3e-27 126.3 314 37.3
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 7.0e-27 125.9 509 29.7
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 1.2e-26 125.2 447 32.9
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.6e-26 124.0 125 55.2
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 4.5e-26 123.2 434 32.0
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 7.7e-26 122.5 122 60.7
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 7.7e-26 122.5 119 57.1
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 5.0e-25 119.8 432 34.0
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.1e-24 118.6 121 53.7
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.5e-24 116.3 121 52.1
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 7.2e-24 115.9 316 38.0
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 9.4e-24 115.5 191 42.4
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 9.4e-24 115.5 419 31.3
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.2e-23 115.2 121 52.1
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.6e-23 114.8 379 34.0
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.6e-21 107.5 391 33.8
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 3.3e-21 107.1 127 50.4
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 7.5e-21 105.9 509 31.0
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 3.7e-20 103.6 478 31.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 2.4e-19 100.9 403 30.8
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 4.1e-19 100.1 320 31.6
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 5.5e-16 89.7 104 51.9
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 2.7e-15 87.4 447 28.6
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 4.4e-13 80.1 42 85.7
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 7.5e-13 79.3 399 29.8
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.4e-11 75.1 239 35.6
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.4e-11 74.3 145 37.9
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 3.1e-11 73.9 258 34.9
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 4.1e-11 73.6 187 37.4
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 4.5e-10 70.1 147 38.8
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 1.1e-08 65.5 200 27.5
DCAR_004692 Daucus carota HOM05D005417 ORTHO05D002591 1.2e-07 62.0 123 36.6
SEGI_26671 Sequoiadendron giganteum HOM05D038370 ORTHO05D037583 1.6e-07 61.6 93 43.0
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 3.6e-07 60.5 226 28.8


User provided reference genes

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