Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 5.7e-104 380.9 196 100.0
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.4e-78 296.6 179 82.1
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.1e-74 282.7 178 79.2
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 6.8e-73 277.7 183 76.0
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 8.3e-71 270.8 195 72.3
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 2.4e-70 269.2 186 75.8
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.2e-69 266.9 181 75.7
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.6e-69 266.5 185 75.1
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 2.3e-68 262.7 184 73.4
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 3.0e-68 262.3 201 67.7
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 3.9e-68 261.9 184 72.8
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 6.6e-68 261.2 197 68.5
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 8.6e-68 260.8 185 70.3
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.5e-67 260.0 201 66.2
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 1.5e-67 260.0 179 71.5
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 4.3e-67 258.5 187 70.1
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 7.3e-67 257.7 177 72.9
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 2.1e-66 256.1 189 66.1
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 2.8e-66 255.8 210 64.8
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 2.8e-66 255.8 174 75.3
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 4.7e-66 255.0 191 69.6
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 6.2e-66 254.6 185 70.8
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 6.2e-66 254.6 189 70.9
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 8.1e-66 254.2 208 65.4
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 8.1e-66 254.2 189 70.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.2e-64 250.4 198 64.1
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 3.4e-64 248.8 197 67.0
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 3.4e-64 248.8 196 62.8
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 5.8e-64 248.1 197 65.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 7.5e-64 247.7 198 63.6
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 1.3e-63 246.9 197 64.0
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 4.9e-63 245.0 174 70.7
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 4.9e-63 245.0 227 59.0
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 6.4e-63 244.6 195 68.2
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 8.3e-63 244.2 170 71.8
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.9e-62 243.0 191 64.4
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 1.9e-62 243.0 175 70.9
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 4.1e-62 241.9 195 65.6
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 5.4e-62 241.5 179 67.0
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 7.1e-62 241.1 199 64.3
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 9.2e-62 240.7 180 67.8
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 1.6e-61 240.0 185 65.4
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 2.1e-61 239.6 196 63.3
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 2.1e-61 239.6 181 66.9
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 2.7e-61 239.2 190 64.2
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 3.5e-61 238.8 181 66.9
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 4.6e-61 238.4 199 63.8
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 6.0e-61 238.0 164 75.6
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 6.0e-61 238.0 195 65.6
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 1.7e-60 236.5 188 64.9
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 2.3e-60 236.1 181 65.7
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 3.9e-60 235.3 175 67.4
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 5.6e-59 231.5 191 62.8
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 9.5e-59 230.7 193 62.2
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 9.5e-59 230.7 188 62.8
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.6e-58 229.9 176 65.3
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 2.8e-58 229.2 196 60.2
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 8.1e-58 227.6 195 62.6
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 8.9e-57 224.2 181 61.3
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 8.9e-57 224.2 181 61.3
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 3.4e-56 222.2 179 63.1
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 3.4e-56 222.2 173 65.9
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.8e-56 221.5 199 59.3
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 5.8e-56 221.5 192 59.9
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 1.7e-55 219.9 180 62.8
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 4.9e-55 218.4 179 62.0
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 6.4e-55 218.0 170 61.8
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 1.9e-54 216.5 186 60.2
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 3.2e-54 215.7 176 63.1
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 9.2e-54 214.2 194 55.7
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 9.2e-54 214.2 186 60.8
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 9.2e-54 214.2 181 60.2
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.2e-53 213.8 169 64.5
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.6e-53 213.4 186 59.1
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 7.8e-53 211.1 190 58.9
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 5.1e-52 208.4 186 59.1
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 8.7e-52 207.6 177 59.9
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 2.8e-50 202.6 175 64.0
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 6.2e-50 201.4 200 54.0
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.8e-49 199.9 187 54.0
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 2.4e-49 199.5 192 55.7
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 6.9e-49 198.0 194 53.1
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 5.8e-48 194.9 168 60.7
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 5.8e-48 194.9 201 53.7
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 2.9e-47 192.6 199 53.8
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 6.4e-47 191.4 163 60.1
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 6.4e-47 191.4 171 59.6
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 2.7e-45 186.0 189 52.4
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 6.0e-45 184.9 189 51.3
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 6.0e-45 184.9 189 51.9
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 6.6e-44 181.4 190 52.1
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 1.5e-43 180.3 182 53.8
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 1.5e-43 180.3 190 51.6
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 9.6e-43 177.6 189 51.3
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 3.6e-42 175.6 162 54.9
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 2.4e-41 172.9 182 52.7
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.2e-40 170.6 180 51.7
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 2.0e-40 169.9 135 60.7
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 2.6e-40 169.5 197 50.8
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 2.6e-40 169.5 197 50.8
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.4e-40 169.1 170 54.7
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 7.6e-40 167.9 201 50.7
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 9.9e-40 167.5 170 54.7
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 1.4e-38 163.7 188 48.4
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 1.6e-34 150.2 125 64.0
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 2.4e-33 146.4 121 64.5
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 3.1e-33 146.0 88 78.4
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 5.3e-33 145.2 193 40.4
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 2.9e-31 139.4 88 75.0
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 8.4e-31 137.9 200 43.5
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.4e-22 110.5 97 62.9
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 3.3e-19 99.4 175 36.6
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 5.7e-19 98.6 186 34.4
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 3.8e-15 85.9 205 29.8
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 4.2e-14 82.4 200 30.0
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 2.6e-08 63.2 39 71.8
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 5.0e-07 58.9 68 47.1


User provided reference genes

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