Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 4.4e-253 877.5 446 100.0
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 2.3e-193 679.1 449 80.4
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 2.1e-186 656.0 449 77.7
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.8e-185 652.9 450 77.1
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 5.7e-184 647.9 447 75.4
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 4.8e-183 644.8 450 76.0
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 2.4e-182 642.5 449 76.2
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 3.5e-181 638.6 449 75.5
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.0e-180 637.1 449 76.8
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 6.5e-180 634.4 452 76.5
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.9e-179 632.9 455 75.2
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 7.2e-179 630.9 452 76.1
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.6e-178 629.8 454 73.1
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.7e-178 628.2 452 75.0
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 8.0e-178 627.5 464 74.1
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.8e-177 626.3 452 75.4
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 6.7e-177 624.4 450 74.2
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 8.8e-177 624.0 451 72.7
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.2e-176 623.6 448 74.1
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.8e-175 619.0 449 74.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 8.2e-175 617.5 448 71.9
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.4e-174 616.7 453 73.3
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.4e-174 615.9 449 73.9
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 5.0e-172 608.2 457 71.8
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 8.5e-172 607.4 449 73.1
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.9e-171 606.3 455 73.4
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 8.0e-170 600.9 447 70.2
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.8e-169 599.7 440 74.3
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 8.8e-169 597.4 448 71.0
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.2e-168 597.0 447 70.7
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.4e-168 595.5 448 70.8
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 7.0e-166 587.8 458 71.8
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.0e-164 583.9 454 69.4
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.0e-164 581.6 454 69.4
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.6e-164 581.3 449 68.6
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.5e-163 580.1 456 66.9
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 7.2e-163 577.8 456 69.7
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.4e-161 573.5 456 70.4
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.2e-161 571.6 458 68.1
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 9.8e-160 567.4 458 67.7
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.2e-159 566.2 450 64.7
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.4e-158 561.6 451 66.3
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-157 560.5 451 66.5
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-157 560.5 458 66.8
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.0e-157 559.7 449 69.3
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.7e-157 559.3 451 67.8
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.0e-156 555.1 452 67.5
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.1e-155 553.9 416 72.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.1e-155 553.9 455 67.9
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.1e-155 553.9 452 67.3
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.1e-155 553.9 452 67.0
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 9.5e-155 550.8 450 70.2
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.2e-154 550.4 451 65.6
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 2.1e-154 549.7 451 67.8
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 5.2e-153 545.0 451 65.4
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 6.8e-153 544.7 451 65.2
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.6e-152 542.7 451 64.7
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 7.5e-152 541.2 448 67.2
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 9.8e-152 540.8 452 64.4
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 4.1e-150 535.4 452 68.4
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 4.1e-150 535.4 437 66.8
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.2e-149 533.9 449 67.9
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.6e-149 533.5 468 66.5
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 3.5e-149 532.3 433 68.6
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 4.6e-149 531.9 452 68.1
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 8.6e-148 527.7 457 65.6
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.5e-147 526.9 460 62.4
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 4.7e-146 521.9 460 62.0
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.4e-145 520.4 461 62.0
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 5.2e-145 518.5 458 66.6
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 8.9e-145 517.7 453 65.1
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 4.4e-144 515.4 468 60.3
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 4.4e-144 515.4 453 64.5
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 7.5e-144 514.6 461 61.4
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.7e-143 513.5 476 60.3
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 6.4e-143 511.5 455 61.3
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 8.3e-143 511.1 453 64.7
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 5.4e-142 508.4 453 63.4
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.1e-141 506.5 452 63.9
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.9e-139 500.0 451 62.5
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 8.9e-137 491.1 458 62.2
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 9.9e-136 487.6 452 61.3
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.1e-134 484.2 465 60.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 3.2e-134 482.6 451 60.8
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.3e-132 477.2 454 60.4
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 6.6e-132 474.9 460 61.1
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 8.1e-130 468.0 416 65.1
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 3.1e-129 466.1 469 59.7
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.2e-128 464.2 466 60.3
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 5.8e-128 461.8 466 61.4
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 7.6e-128 461.5 472 60.8
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 3.8e-127 459.1 463 60.0
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.1e-126 457.6 467 60.0
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 2.7e-125 453.0 464 58.8
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 3.5e-125 452.6 462 60.0
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 7.3e-123 444.9 458 56.6
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 7.3e-123 444.9 459 59.5
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 1.6e-117 427.2 347 68.9
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 2.1e-117 426.8 453 55.6
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.1e-113 414.5 465 56.8
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.1e-113 414.5 465 56.8
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 3.1e-113 412.9 460 56.1
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 5.3e-113 412.1 465 56.6
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 6.4e-111 405.2 456 53.5
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 7.1e-110 401.7 455 52.3
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.3e-108 397.5 467 54.6
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.3e-108 396.7 454 52.4
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 3.9e-108 396.0 467 54.4
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 9.0e-105 384.8 470 50.9
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 7.6e-104 381.7 457 51.2
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.0e-103 381.3 456 52.4
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.0e-95 354.8 454 49.6
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.9e-92 342.8 452 47.6
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 6.5e-87 325.5 450 44.4
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.4e-84 317.8 309 60.5
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.3e-79 301.2 280 60.0
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.2e-77 294.7 456 42.5
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.2e-69 268.1 343 46.9
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.2e-56 224.9 306 45.1
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 9.8e-51 205.3 456 38.2
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 9.5e-38 162.2 162 48.8
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.6e-37 161.4 399 33.8
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 7.5e-35 152.5 157 59.2
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 4.6e-08 63.5 121 33.1
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.0e-07 62.4 119 31.1
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.3e-07 62.0 75 38.7
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.5e-06 58.5 110 31.8
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.5e-06 57.8 63 55.6


User provided reference genes

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