Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 0.0e+00 1111.7 596 100.0
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 4.3e-296 1020.8 596 89.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.9e-291 1005.4 598 88.3
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 9.3e-291 1003.0 596 88.4
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.6e-290 1002.3 596 88.8
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 2.7e-290 1001.5 595 87.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 6.0e-290 1000.3 595 87.2
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.3e-289 999.2 596 88.1
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.3e-287 992.6 588 88.6
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 3.1e-286 988.0 596 86.7
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.9e-286 986.9 596 87.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 9.0e-286 986.5 598 87.8
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.5e-285 984.2 599 86.1
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.9e-285 983.8 596 84.4
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.3e-284 982.6 596 84.9
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.8e-284 981.1 596 84.6
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 6.5e-284 980.3 596 85.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 4.2e-283 977.6 596 84.9
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.3e-281 971.8 596 83.2
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 2.2e-279 965.3 596 84.1
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.2e-276 955.3 598 85.3
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 8.5e-276 953.4 597 85.1
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 4.2e-275 951.0 594 83.5
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 3.6e-274 948.0 596 83.1
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 3.6e-274 948.0 594 83.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 3.6e-274 948.0 597 82.4
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.7e-274 947.6 600 83.7
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 4.4e-272 941.0 598 82.1
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 5.3e-270 934.1 596 82.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 5.3e-270 934.1 603 80.1
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 9.1e-270 933.3 608 79.4
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 9.1e-270 933.3 601 82.2
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.5e-269 931.0 596 82.4
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.5e-269 931.0 596 82.4
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 7.7e-269 930.2 607 81.1
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.3e-268 929.5 600 81.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.3e-268 929.5 600 80.5
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.7e-268 929.1 600 80.5
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.2e-268 928.7 600 81.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.9e-268 928.3 600 81.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.8e-268 927.9 598 80.4
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 3.2e-267 924.9 597 80.1
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.2e-267 924.5 603 79.9
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.2e-267 924.5 602 79.6
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-266 922.9 608 76.3
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.1e-266 922.2 608 76.2
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.3e-263 912.9 606 78.5
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.2e-263 912.1 598 79.4
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.2e-263 912.1 606 80.2
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.4e-262 908.7 598 78.1
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.1e-262 908.3 596 79.5
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 3.1e-262 908.3 590 78.6
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.0e-262 907.1 602 79.1
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 2.6e-261 905.2 598 78.8
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 5.9e-261 904.0 601 78.2
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 7.7e-261 903.7 596 78.5
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 7.7e-261 903.7 596 79.0
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.7e-260 902.5 598 77.4
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.7e-260 902.5 598 77.4
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.7e-260 902.5 597 78.9
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.7e-260 902.5 596 78.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.7e-260 902.5 596 79.4
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.8e-260 901.4 596 78.4
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 8.5e-260 900.2 596 77.7
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.1e-259 899.8 600 79.3
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.5e-259 899.4 596 78.0
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.5e-259 898.7 598 78.9
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 5.5e-259 897.5 598 79.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.6e-258 896.0 597 79.9
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.1e-258 895.6 597 78.4
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.7e-258 895.2 601 78.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 4.7e-258 894.4 597 78.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.4e-257 892.9 598 78.1
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.4e-257 892.9 598 78.1
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.4e-257 892.9 598 78.1
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 5.2e-257 891.0 601 78.0
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 5.7e-256 887.5 597 77.6
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-254 883.2 605 76.0
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-254 883.2 600 78.0
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.1e-254 881.7 608 76.2
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 3.1e-254 881.7 616 77.3
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 7.0e-254 880.6 596 78.5
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 7.0e-254 880.6 596 79.4
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.6e-253 879.4 601 78.5
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.7e-253 878.6 596 76.7
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.7e-252 875.9 597 75.7
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-252 875.5 597 75.4
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 2.2e-252 875.5 603 76.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.8e-252 874.8 595 75.0
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 9.4e-251 870.2 610 77.0
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-250 869.8 589 77.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.6e-250 869.4 596 77.9
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.0e-248 862.4 595 76.0
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 5.7e-248 860.9 596 74.5
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.8e-246 855.9 596 76.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 2.3e-244 849.0 596 75.3
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 5.0e-244 847.8 605 75.9
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.2e-239 832.4 595 75.1
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.8e-239 832.0 598 76.1
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.4e-238 829.7 602 74.9
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.4e-238 829.7 597 72.2
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 4.1e-238 828.2 597 71.7
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.2e-237 826.6 601 74.4
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.0e-236 823.5 549 74.9
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.0e-236 821.2 548 77.6
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.9e-235 819.3 645 71.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.1e-234 814.3 596 72.1
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 4.0e-233 811.6 609 73.2
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.8e-233 810.8 600 73.3
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-231 806.6 602 72.9
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 4.3e-227 791.6 871 54.1
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.8e-226 788.9 596 73.3
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 4.0e-225 785.0 610 69.2
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.5e-224 783.1 610 69.0
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 5.8e-224 781.2 597 70.9
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 7.3e-219 764.2 614 65.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.4e-217 760.0 597 68.3
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 4.4e-216 755.0 596 70.0
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.1e-210 736.1 566 69.3
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.8e-201 706.4 474 78.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.4e-184 649.0 598 62.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.8e-183 645.6 443 77.9
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.2e-170 601.3 518 67.2
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 3.8e-159 565.8 603 53.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 5.0e-159 565.5 599 52.1
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 3.5e-152 542.7 600 52.7
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 2.5e-142 510.0 597 53.3
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 5.2e-132 475.7 614 44.6
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-130 470.3 581 47.5
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 3.1e-92 343.6 209 79.4
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.8e-91 339.3 243 69.5
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.4e-84 317.4 322 55.3
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.9e-79 300.1 622 36.8
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.8e-71 274.6 236 69.5
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-63 248.8 216 63.0
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 7.4e-62 242.7 589 30.9
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.2e-53 214.5 148 74.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.5e-49 201.1 151 70.2
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.5e-34 149.8 201 45.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 7.2e-33 146.4 98 71.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.2e-32 145.6 623 25.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 5.5e-25 120.2 78 71.8
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 4.7e-24 117.1 78 70.5
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.4e-22 110.9 72 69.4
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 9.1e-20 102.8 212 47.6
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-18 98.2 115 43.5
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 5.7e-14 83.6 90 47.8
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.3e-13 82.4 59 71.2
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.9e-09 68.6 96 40.6


User provided reference genes

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