Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 0.0e+00 1260.4 622 100.0
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 6.8e-252 874.0 623 72.7
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 5.4e-249 864.4 594 74.2
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.6e-248 862.8 626 71.1
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 7.8e-248 860.5 620 71.0
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 1.2e-245 853.2 623 70.8
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 6.8e-244 847.4 621 69.6
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.5e-243 846.3 617 70.5
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 7.1e-241 837.4 625 69.0
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 1.5e-238 829.7 625 68.5
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 8.1e-237 823.9 619 68.2
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.4e-236 822.4 623 68.9
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 7.6e-235 817.4 626 68.4
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 1.7e-234 816.2 626 68.4
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 7.8e-232 807.4 621 67.0
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 6.6e-231 804.3 614 68.6
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 4.8e-229 798.1 627 65.2
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 6.2e-229 797.7 621 65.7
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 2.9e-226 788.9 623 64.4
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 3.8e-226 788.5 581 70.1
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 3.8e-226 788.5 626 65.0
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 8.4e-226 787.3 626 64.5
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 7.1e-225 784.3 608 68.3
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 2.1e-224 782.7 616 63.6
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 6.0e-224 781.2 626 64.4
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 1.0e-223 780.4 592 68.4
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 3.0e-223 778.9 620 65.3
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 8.7e-223 777.3 619 64.1
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.1e-222 776.9 628 65.4
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.5e-222 776.5 629 65.3
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 4.3e-222 775.0 595 65.2
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 5.6e-222 774.6 595 65.5
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 7.4e-222 774.2 619 65.6
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 7.4e-222 774.2 587 68.0
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.4e-220 770.0 622 65.0
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.4e-220 770.0 626 64.7
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.8e-220 769.6 610 61.6
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 1.8e-220 769.6 610 61.6
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 5.3e-220 768.1 627 64.3
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 5.3e-220 768.1 626 64.9
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 6.9e-220 767.7 595 66.2
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 1.2e-219 766.9 593 65.1
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 3.4e-219 765.4 630 62.2
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 7.6e-219 764.2 627 63.8
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 1.7e-218 763.1 627 64.0
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.7e-218 763.1 620 63.7
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 2.2e-218 762.7 542 71.8
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 3.8e-218 761.9 583 66.6
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 3.8e-218 761.9 627 64.0
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 6.4e-218 761.1 588 68.2
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 6.4e-218 761.1 587 67.3
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 8.4e-218 760.8 588 68.5
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.4e-217 759.2 629 63.1
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.5e-217 758.1 628 61.9
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 5.5e-217 758.1 623 63.4
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.2e-216 756.9 591 64.8
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 1.6e-216 756.5 623 63.2
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 2.7e-216 755.7 626 62.9
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 4.6e-216 755.0 623 63.1
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 7.9e-216 754.2 620 61.6
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 1.8e-215 753.1 612 63.6
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 2.3e-215 752.7 623 64.0
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 3.0e-215 752.3 630 61.6
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 3.9e-215 751.9 627 63.2
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.5e-214 750.0 620 61.3
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 5.6e-214 748.0 625 63.4
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 9.6e-214 747.3 616 62.3
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.3e-213 746.9 634 61.4
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 1.3e-213 746.9 620 63.7
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 2.1e-213 746.1 630 60.0
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 4.8e-213 745.0 620 61.0
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.4e-212 742.7 645 60.0
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 3.4e-211 738.8 586 65.4
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 7.6e-211 737.6 674 60.4
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 2.2e-210 736.1 618 60.7
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 1.1e-209 733.8 621 60.2
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.2e-208 730.3 586 64.2
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 2.7e-208 729.2 624 61.1
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 4.3e-206 721.8 628 60.8
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 5.7e-206 721.5 610 63.4
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 2.0e-203 713.0 623 59.1
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 2.0e-203 713.0 608 60.5
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 2.9e-202 709.1 622 60.6
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.4e-201 706.8 578 61.2
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 3.0e-199 699.1 607 61.3
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 2.8e-197 692.6 604 60.9
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.4e-196 690.3 691 54.3
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.8e-196 689.9 572 62.6
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 1.2e-195 687.2 569 61.7
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 9.4e-193 677.6 622 59.2
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.4e-188 663.7 554 63.9
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 1.0e-186 657.5 552 63.9
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-185 654.1 590 58.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.2e-185 652.1 601 57.7
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 7.4e-182 641.3 618 55.8
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 7.4e-182 641.3 591 58.2
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 1.1e-180 637.5 578 56.9
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 4.1e-180 635.6 622 58.4
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.2e-179 634.0 616 55.5
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 8.0e-176 621.3 618 52.3
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 4.4e-174 615.5 585 53.8
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 4.5e-171 605.5 627 52.3
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.3e-170 604.0 444 66.4
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 1.2e-168 597.4 570 56.8
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 1.8e-167 593.6 630 52.2
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 8.8e-167 591.3 612 53.4
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.2e-165 586.6 343 82.5
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-159 567.8 604 51.3
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 4.9e-157 558.9 572 53.8
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 1.2e-147 527.7 489 57.5
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.9e-145 520.4 446 60.1
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 6.8e-127 458.8 633 42.8
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 4.8e-112 409.5 613 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 2.1e-107 394.0 571 39.4
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 6.7e-106 389.0 530 44.0
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.6e-99 367.9 582 36.8
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.8e-96 357.1 328 54.9
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 5.5e-92 342.8 237 69.6
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.0e-90 337.0 351 51.3
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 7.2e-84 315.8 365 48.2
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 6.5e-77 292.7 203 69.0
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 7.7e-70 269.2 232 58.6
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 2.3e-66 257.7 455 33.0
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 3.5e-62 243.8 204 60.8
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 6.5e-61 239.6 186 65.6
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.5e-60 236.5 287 47.7
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.9e-32 144.4 267 36.0
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 3.5e-30 137.5 147 46.3
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 5.8e-25 120.2 76 75.0
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 3.2e-23 114.4 225 40.0
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 2.7e-22 111.3 75 76.0
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.7e-21 108.6 332 28.6
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 8.6e-21 106.3 422 23.9
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.5e-20 105.5 199 34.2
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 2.6e-17 94.7 49 85.7
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 3.9e-13 80.9 100 51.0
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 3.3e-12 77.8 165 30.9
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 1.5e-09 68.9 51 66.7


User provided reference genes

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