Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.7e-288 995.3 529 100.0
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 5.1e-131 472.2 497 52.5
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 5.4e-125 452.2 497 49.1
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.5e-111 406.0 507 44.6
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.5e-108 396.4 527 43.1
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.3e-107 394.4 507 42.2
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 7.7e-103 378.6 479 43.8
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.8e-99 367.5 511 40.5
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 1.7e-97 360.9 360 54.2
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.0e-95 354.0 527 41.7
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.5e-93 347.1 526 41.1
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 6.1e-92 342.4 523 39.8
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 7.9e-92 342.0 531 40.3
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.0e-91 340.1 487 42.5
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 8.8e-91 338.6 526 39.9
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.6e-90 337.0 520 41.0
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.6e-90 337.0 520 40.2
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.7e-90 335.9 518 42.7
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 7.4e-90 335.5 520 40.6
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 7.4e-90 335.5 559 39.0
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 9.7e-90 335.1 510 40.8
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 6.3e-89 332.4 520 39.2
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 6.3e-89 332.4 520 41.5
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 8.2e-89 332.0 545 39.4
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.4e-88 331.3 537 41.9
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.4e-88 331.3 557 38.1
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.4e-88 330.5 541 39.7
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.1e-88 330.1 504 39.5
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 3.1e-88 330.1 493 40.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 4.1e-88 329.7 554 42.6
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 4.1e-88 329.7 511 39.3
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 5.3e-88 329.3 477 40.3
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 7.0e-88 328.9 489 40.1
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 7.0e-88 328.9 522 43.3
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 1.2e-87 328.2 537 38.4
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.4e-87 326.6 554 38.8
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 3.4e-87 326.6 537 38.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 4.5e-87 326.2 551 37.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 5.9e-87 325.9 530 39.4
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.7e-87 325.5 520 38.7
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.7e-87 325.5 520 38.7
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.0e-86 325.1 515 39.0
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.0e-86 325.1 538 39.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.3e-86 324.7 510 39.6
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.7e-86 324.3 516 39.9
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.7e-86 324.3 554 38.1
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 2.2e-86 323.9 504 38.1
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.2e-86 323.9 563 38.0
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 3.8e-86 323.2 531 43.3
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 3.8e-86 323.2 546 38.1
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 6.5e-86 322.4 555 38.6
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 8.5e-86 322.0 524 39.5
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.4e-85 321.2 515 40.2
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 1.9e-85 320.9 567 38.4
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 3.2e-85 320.1 534 39.0
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 3.2e-85 320.1 528 40.3
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 7.2e-85 318.9 555 40.2
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 9.4e-85 318.5 520 41.0
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.6e-84 317.8 530 40.4
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.6e-84 317.8 543 38.1
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 2.7e-84 317.0 516 38.6
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 3.6e-84 316.6 540 40.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 3.6e-84 316.6 529 42.3
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.6e-84 316.6 480 41.5
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 3.6e-84 316.6 523 42.6
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 4.7e-84 316.2 532 38.9
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 6.1e-84 315.8 529 39.9
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.4e-83 314.7 510 43.5
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.8e-83 314.3 516 42.6
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 2.3e-83 313.9 533 40.3
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 3.0e-83 313.5 517 43.1
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 3.0e-83 313.5 547 38.0
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 3.9e-83 313.2 533 38.1
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.9e-83 313.2 517 42.6
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 5.2e-83 312.8 533 40.0
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 5.2e-83 312.8 528 40.0
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 6.7e-83 312.4 571 37.8
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 8.8e-83 312.0 522 41.6
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.6e-82 310.5 524 37.4
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.6e-82 310.5 514 42.0
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.3e-82 310.1 496 39.3
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 4.4e-82 309.7 544 37.1
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 4.4e-82 309.7 495 40.2
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 4.4e-82 309.7 531 36.9
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 5.7e-82 309.3 542 37.6
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 5.7e-82 309.3 511 38.6
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.7e-81 307.8 507 41.8
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.7e-81 307.8 505 39.0
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.7e-81 306.6 512 38.5
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 3.7e-81 306.6 563 36.2
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 4.8e-81 306.2 546 36.6
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.8e-81 306.2 514 38.3
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.1e-80 305.1 623 34.2
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.4e-80 304.7 508 37.6
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.8e-80 304.3 517 38.9
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 2.4e-80 303.9 527 41.2
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 2.4e-80 303.9 486 40.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 9.1e-80 302.0 561 36.5
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 2.0e-79 300.8 554 36.6
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 5.9e-79 299.3 514 39.9
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.9e-79 299.3 498 37.8
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 7.7e-79 298.9 483 39.5
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-78 298.1 514 40.5
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 1.3e-78 298.1 539 36.5
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 6.5e-78 295.8 492 38.4
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.5e-78 295.8 552 36.4
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 8.5e-78 295.4 590 35.1
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.1e-77 295.0 570 38.6
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-77 295.0 487 39.6
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.9e-77 294.3 504 38.1
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 3.2e-77 293.5 570 38.4
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 3.2e-77 293.5 497 38.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.2e-77 293.5 547 36.0
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 3.2e-77 293.5 525 37.3
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 4.2e-77 293.1 557 36.3
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 4.2e-77 293.1 569 34.6
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 5.5e-77 292.7 535 37.0
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 5.5e-77 292.7 664 31.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 7.2e-77 292.4 557 36.1
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 9.4e-77 292.0 557 36.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.7e-76 290.4 481 38.7
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 3.6e-76 290.0 578 38.2
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.6e-76 290.0 548 36.1
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 4.7e-76 289.7 551 35.4
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 8.0e-76 288.9 516 39.5
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.4e-75 288.1 494 39.1
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 2.3e-75 287.3 539 34.7
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 4.0e-75 286.6 480 38.1
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 6.7e-75 285.8 545 38.7
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.7e-75 285.8 484 38.4
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.8e-75 285.4 514 37.0
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.2e-74 285.0 349 45.6
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 2.6e-74 283.9 558 34.9
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.7e-74 282.0 489 38.0
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.7e-74 282.0 554 35.2
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 1.7e-73 281.2 501 36.3
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 2.2e-73 280.8 525 37.0
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 6.3e-73 279.3 549 33.5
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.1e-72 278.5 525 36.6
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 5.3e-72 276.2 513 35.5
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.9e-69 267.7 531 37.1
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 2.7e-68 263.8 508 34.8
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 8.0e-68 262.3 376 42.6
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 1.3e-65 255.0 626 31.5
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 3.7e-65 253.4 507 40.0
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.4e-64 250.8 337 44.2
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 4.5e-63 246.5 584 32.4
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 4.5e-63 246.5 513 34.5
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.0e-62 245.4 352 44.6
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 3.3e-61 240.4 320 43.8
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 6.8e-59 232.6 605 31.6
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.0e-58 231.1 343 44.0
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 9.8e-58 228.8 520 35.6
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.6e-55 221.5 390 37.2
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.5e-50 204.9 331 35.6
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 3.6e-44 183.7 300 36.7
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 6.4e-41 172.9 342 34.2
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 2.8e-28 131.0 114 58.8
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 5.3e-19 100.1 65 66.2
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.5e-18 98.6 81 56.8
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.9e-18 95.9 107 48.6
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.4e-16 90.1 69 59.4
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.8e-12 77.8 159 35.8
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.5e-10 72.0 109 34.9
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 3.8e-09 67.4 124 34.7


User provided reference genes

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