Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 0.0e+00 1289.2 668 100.0
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 6.2e-275 950.7 659 74.1
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.4e-274 949.5 690 70.3
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.7e-272 942.6 674 69.3
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 3.0e-269 931.8 641 71.1
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 7.3e-268 927.2 675 68.3
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 4.7e-267 924.5 675 68.0
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 8.1e-267 923.7 665 69.5
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.4e-266 922.9 662 69.3
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 8.9e-266 920.2 672 67.9
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.2e-265 919.8 672 68.5
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.2e-265 919.8 661 70.2
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 3.4e-265 918.3 661 70.3
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.7e-264 916.0 663 68.5
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 4.9e-264 914.4 667 67.9
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 8.3e-264 913.7 674 68.2
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 7.8e-262 907.1 670 68.1
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.0e-261 906.7 671 67.5
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 7.3e-260 900.6 640 69.2
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 2.6e-257 892.1 666 68.3
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.3e-256 889.8 665 68.9
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.7e-256 889.4 672 66.7
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 4.1e-255 884.8 665 68.6
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.8e-254 880.6 665 68.7
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.3e-253 879.0 616 70.0
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 7.3e-252 874.0 671 65.7
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.5e-249 866.3 667 66.9
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.7e-248 862.8 677 66.8
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 6.4e-248 860.9 676 66.1
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.4e-247 859.0 675 65.3
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 2.3e-245 852.4 668 65.1
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 5.6e-244 847.8 673 64.6
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 1.3e-243 846.7 640 65.8
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 6.2e-243 844.3 672 64.3
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 5.3e-242 841.3 657 66.2
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 9.0e-242 840.5 636 65.1
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.2e-241 840.1 672 65.0
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 4.5e-241 838.2 606 69.1
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 3.8e-240 835.1 669 64.0
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 6.4e-240 834.3 694 63.3
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 8.4e-240 833.9 659 66.8
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 3.5e-238 828.6 681 61.8
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 4.6e-238 828.2 669 63.2
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 7.9e-238 827.4 659 64.2
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.3e-237 826.6 643 65.9
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 1.3e-237 826.6 642 65.3
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.8e-237 826.2 683 63.4
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 5.1e-237 824.7 665 62.9
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 8.7e-237 823.9 666 63.2
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.3e-236 822.0 654 63.8
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 4.3e-236 821.6 663 62.7
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 5.6e-236 821.2 666 63.1
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 5.6e-236 821.2 642 66.4
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 9.6e-236 820.5 672 63.2
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 3.7e-235 818.5 670 63.3
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.1e-234 817.0 662 63.6
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.1e-234 815.5 655 63.8
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 3.1e-234 815.5 665 63.5
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 6.9e-234 814.3 663 61.8
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.6e-233 812.4 666 62.6
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.6e-233 812.4 659 64.0
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 7.6e-233 810.8 654 64.1
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 2.9e-232 808.9 657 63.5
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.9e-232 808.9 666 63.4
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 6.4e-232 807.7 663 63.0
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.9e-231 806.2 670 62.1
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 1.9e-231 806.2 633 65.2
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 4.2e-231 805.1 657 62.7
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 4.2e-231 805.1 663 62.6
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 7.1e-231 804.3 661 61.4
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 7.1e-231 804.3 667 61.6
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 7.1e-231 804.3 663 62.6
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 1.2e-230 803.5 625 63.8
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 4.6e-230 801.6 658 62.8
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 7.9e-230 800.8 663 62.7
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.8e-229 799.7 663 62.0
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.1e-228 797.0 653 62.3
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 2.5e-228 795.8 610 65.6
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.6e-227 793.1 663 62.1
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 2.8e-227 792.3 663 61.7
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 4.8e-227 791.6 669 61.4
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 4.8e-227 791.6 670 61.6
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 6.2e-227 791.2 581 68.3
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.4e-226 790.0 667 62.2
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 6.9e-226 787.7 657 60.9
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 3.4e-225 785.4 647 63.2
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 7.6e-225 784.3 661 62.0
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.8e-224 781.9 580 69.0
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 9.3e-223 777.3 656 61.6
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.6e-222 776.5 663 61.7
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 3.5e-222 775.4 624 63.6
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.0e-221 773.9 662 61.6
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 3.3e-220 768.8 616 63.5
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 6.3e-219 764.6 669 60.7
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 6.9e-218 761.1 583 65.7
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 9.0e-218 760.8 674 59.2
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.5e-212 742.7 703 57.5
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 3.7e-211 738.8 619 59.1
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 4.1e-210 735.3 665 57.6
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 8.2e-203 711.1 565 62.8
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 5.5e-191 671.8 549 60.8
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 2.8e-174 616.3 559 56.4
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 2.7e-169 599.7 495 60.0
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 5.0e-160 568.9 499 59.9
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.9e-159 567.0 619 50.2
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.4e-154 550.8 556 55.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.1e-146 524.6 596 48.7
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 1.1e-143 514.6 426 60.3
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.9e-131 472.6 451 53.2
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.7e-128 464.2 390 65.4
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 6.2e-126 455.7 623 42.7
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 4.2e-122 443.0 668 42.8
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 3.9e-120 436.4 786 35.2
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.5e-119 434.5 393 55.7
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.1e-103 381.7 524 42.0
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.6e-97 360.1 197 82.7
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.5e-84 318.2 321 52.6
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 2.3e-80 304.3 279 56.3
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 2.3e-72 277.7 226 60.2
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.3e-70 271.9 218 64.7
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 2.8e-70 270.8 643 32.2
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 2.2e-67 261.2 235 56.2
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 5.9e-60 236.5 383 42.3
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 4.0e-56 223.8 683 29.3
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 4.0e-56 223.8 656 29.7
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.2e-55 222.2 627 28.5
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.7e-44 184.5 278 42.8
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.7e-44 184.5 278 42.8
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 2.3e-43 181.4 121 73.6
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 2.1e-41 174.9 121 76.0
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 3.6e-41 174.1 174 56.3
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 6.8e-40 169.9 145 55.2
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 7.5e-39 166.4 140 60.7
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 1.3e-35 155.6 122 66.4
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.5e-34 151.4 291 37.1
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.4e-30 136.3 179 40.8
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 2.1e-28 131.7 170 47.1
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 5.1e-27 127.1 196 41.3
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.8e-25 121.3 237 37.1
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.1e-25 119.8 237 36.7
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 8.1e-25 119.8 237 36.7
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.1e-25 119.8 237 36.7
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.1e-25 119.8 237 36.7
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 2.2e-22 111.7 75 81.3
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.4e-21 109.0 168 41.7
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.9e-21 108.6 168 42.3
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.4e-21 108.2 168 41.7
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 3.2e-21 107.8 140 43.6
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.2e-21 107.8 168 41.1
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 1.3e-19 102.4 75 76.0
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 5.1e-19 100.5 77 72.7
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.6e-09 68.9 50 62.0
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 2.1e-09 68.6 75 50.7
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 6.2e-09 67.0 40 70.0
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 8.1e-09 66.6 75 49.3


User provided reference genes

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