Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 1.5e-108 396.4 217 100.0
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 1.3e-64 250.4 211 68.2
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 7.4e-44 181.4 230 52.2
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 7.1e-39 164.9 211 50.2
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 2.7e-38 162.9 208 51.9
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 4.6e-38 162.2 121 71.1
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 1.0e-37 161.0 165 55.8
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 5.1e-37 158.7 229 48.5
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 5.6e-36 155.2 182 53.3
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 5.6e-36 155.2 157 59.9
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 5.6e-36 155.2 206 53.4
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 5.6e-36 155.2 221 52.9
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.6e-35 153.7 157 54.8
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 3.7e-35 152.5 122 68.9
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 4.8e-35 152.1 103 75.7
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 1.4e-34 150.6 103 74.8
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 1.4e-34 150.6 178 55.1
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.4e-34 150.6 157 55.4
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 1.8e-34 150.2 115 66.1
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 3.1e-34 149.4 142 62.0
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 4.0e-34 149.1 141 59.6
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 4.0e-34 149.1 136 63.2
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 4.0e-34 149.1 133 60.2
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 4.0e-34 149.1 178 50.0
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 9.0e-34 147.9 123 65.9
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 2.6e-33 146.4 158 57.0
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 3.4e-33 146.0 153 56.2
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 4.5e-33 145.6 221 49.3
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 5.8e-33 145.2 221 49.3
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 7.6e-33 144.8 156 57.1
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 1.0e-32 144.4 218 46.3
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 1.0e-32 144.4 133 63.9
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.3e-32 144.1 159 59.1
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 2.9e-32 142.9 217 47.5
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 6.5e-32 141.7 146 56.8
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 6.5e-32 141.7 157 54.8
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.4e-31 140.6 128 63.3
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 3.2e-31 139.4 136 63.2
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 3.2e-31 139.4 96 71.9
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 4.2e-31 139.0 136 63.2
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 4.2e-31 139.0 124 63.7
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 5.5e-31 138.7 184 51.1
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 7.1e-31 138.3 156 54.5
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 9.3e-31 137.9 104 69.2
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.6e-30 135.6 101 72.3
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 4.6e-30 135.6 174 51.1
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 2.3e-29 133.3 159 52.2
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 3.0e-29 132.9 134 58.2
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 6.7e-29 131.7 142 58.5
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 6.7e-29 131.7 157 52.2
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 6.7e-29 131.7 185 51.9
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 1.1e-28 131.0 105 65.7
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 1.5e-28 130.6 117 61.5
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 1.9e-28 130.2 122 61.5
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 2.5e-28 129.8 203 45.8
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.3e-28 129.0 146 56.8
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 4.3e-28 129.0 167 52.7
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 4.3e-28 129.0 177 51.4
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 4.3e-28 129.0 178 52.2
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 5.7e-28 128.6 213 45.1
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 5.7e-28 128.6 122 58.2
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 2.1e-27 126.7 120 62.5
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 2.8e-27 126.3 187 49.7
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 3.7e-27 125.9 122 58.2
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 4.8e-27 125.6 134 56.0
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 4.8e-27 125.6 133 56.4
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 6.3e-27 125.2 100 66.0
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 6.3e-27 125.2 163 46.6
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 2.4e-26 123.2 185 45.4
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 5.3e-26 122.1 185 47.6
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 9.0e-26 121.3 162 51.9
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.2e-25 120.9 84 69.0
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 1.5e-25 120.6 96 66.7
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.0e-25 120.2 105 61.9
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 2.6e-25 119.8 140 51.4
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 7.6e-25 118.2 180 48.3
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 7.6e-25 118.2 102 63.7
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.0e-24 117.9 121 57.0
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 1.0e-24 117.9 224 45.1
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 2.2e-24 116.7 103 61.2
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 3.8e-24 115.9 188 43.6
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 8.5e-24 114.8 134 50.0
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 8.5e-24 114.8 105 62.9
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 1.9e-23 113.6 106 60.4
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 1.9e-23 113.6 180 46.1
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 3.2e-23 112.8 109 60.6
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 9.3e-23 111.3 92 60.9
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 1.2e-22 110.9 132 49.2
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 1.6e-22 110.5 125 48.0
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 1.6e-22 110.5 95 65.3
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 2.7e-22 109.8 142 50.7
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 2.7e-22 109.8 133 51.1
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 3.6e-22 109.4 95 65.3
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 3.6e-22 109.4 148 48.6
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 3.6e-22 109.4 95 65.3
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.8e-21 107.1 185 43.2
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.3e-21 106.7 91 63.7
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 2.3e-21 106.7 122 50.0
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 2.3e-21 106.7 83 67.5
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 6.7e-21 105.1 85 62.4
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.5e-20 104.0 123 48.8
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 2.5e-20 103.2 176 42.6
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 4.3e-20 102.4 65 76.9
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 7.4e-20 101.7 95 62.1
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 1.6e-19 100.5 115 50.4
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 1.4e-18 97.4 84 63.1
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 1.5e-17 94.0 76 59.2
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 1.5e-17 94.0 118 50.0
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 2.0e-17 93.6 91 53.8
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 3.4e-17 92.8 109 49.5
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 4.5e-17 92.4 147 43.5
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 7.7e-17 91.7 153 43.8
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 1.0e-16 91.3 116 49.1
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 3.8e-16 89.4 122 48.4
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 3.8e-16 89.4 142 45.8
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 5.0e-16 89.0 117 47.9
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 5.0e-16 89.0 81 60.5
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 1.4e-15 87.4 135 43.0
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 1.9e-15 87.0 60 70.0
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.0e-13 81.3 98 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 8.8e-13 78.2 70 60.0
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 4.8e-11 72.4 105 47.6
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 8.2e-11 71.6 92 48.9
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 8.2e-11 71.6 92 48.9
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.1e-10 71.2 90 50.0
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.1e-10 71.2 90 50.0
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 2.0e-09 67.0 196 33.2
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 5.0e-08 62.4 65 49.2


User provided reference genes

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