Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G039200 Manihot esculenta HOM05D007918 ORTHO05D010025 9.1e-58 226.9 130 100.0
Manes.12G038300 Manihot esculenta HOM05D007918 ORTHO05D010025 4.4e-36 154.8 130 66.9
Sabra02G0194600 Salix brachista HOM05D007918 ORTHO05D010025 3.4e-28 128.6 87 74.7
TWI12G1379 Tripterygium wilfordii HOM05D007918 ORTHO05D010025 1.0e-24 117.1 87 58.6
Potri.002G256100 Populus trichocarpa HOM05D007918 ORTHO05D010025 5.1e-24 114.8 127 59.1
TAR362G0051 Trochodendron aralioides HOM05D007918 ORTHO05D010025 1.2e-22 110.2 92 63.0
CiPaw.03G271500 Carya illinoinensis HOM05D007918 ORTHO05D010025 3.1e-21 105.5 92 56.5
Glyma.03G167700 Glycine max HOM05D007918 ORTHO05D010025 3.1e-21 105.5 87 56.3
Atru.chr5.1868 Acer truncatum HOM05D007918 ORTHO05D010025 4.0e-21 105.1 128 50.0
Sopen09g025600 Solanum pennellii HOM05D000691 ORTHO05D000378 4.4e-20 101.7 89 53.9
Solyc09g064460.1 Solanum lycopersicum HOM05D007918 ORTHO05D010025 1.7e-19 99.8 89 52.8
Lj1g0000049 Lotus japonicus HOM05D007918 ORTHO05D010025 2.2e-19 99.4 87 55.2
PGSC0003DMG400008578 Solanum tuberosum HOM05D007918 ORTHO05D010025 4.9e-19 98.2 128 44.5
Glyma.19G168900 Glycine max HOM05D007918 ORTHO05D010025 6.4e-19 97.8 125 46.4
Duzib211G0621 Durio zibethinus HOM05D007918 ORTHO05D010025 8.4e-19 97.4 126 38.9
Phvul.001G165400 Phaseolus vulgaris HOM05D007918 ORTHO05D010025 1.1e-18 97.1 72 61.1
TPR.G29178 Trifolium pratense HOM05D007918 ORTHO05D010025 2.4e-18 95.9 73 60.3
Rhsim01G0260000 Rhododendron simsii HOM05D007918 ORTHO05D010025 1.2e-17 93.6 116 47.4
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 1.6e-17 93.2 72 61.1
Hma1.2p1_2127F.1_g314650 Hydrangea macrophylla HOM05D007918 ORTHO05D010025 1.6e-17 93.2 128 43.0
Actinidia23702 Actinidia chinensis HOM05D007918 ORTHO05D010025 4.6e-17 91.7 78 61.5
VMungo1383G2778 Vigna mungo HOM05D007918 ORTHO05D010025 1.3e-16 90.1 129 41.9
COL.COLO4_02903 Corchorus olitorius HOM05D007918 ORTHO05D010025 1.7e-16 89.7 78 52.6
QL09p041632 Quercus lobata HOM05D007918 ORTHO05D010025 1.7e-16 89.7 115 45.2
Cpa.g.sc87.38 Carica papaya HOM05D007918 ORTHO05D010025 3.0e-16 89.0 80 57.5
Eucgr.K01423 Eucalyptus grandis HOM05D007918 ORTHO05D010025 3.0e-16 89.0 123 43.9
Lalb_Chr25g0289821 Lupinus albus HOM05D007918 ORTHO05D010025 3.0e-16 89.0 81 50.6
Medtr7g098680 Medicago truncatula HOM05D007918 ORTHO05D010025 3.0e-16 89.0 119 47.1
Thecc.01G249400 Theobroma cacao HOM05D007918 ORTHO05D010025 3.0e-16 89.0 123 40.7
Gohir.D07G209900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 3.9e-16 88.6 123 40.7
Gorai.001G237300 Gossypium raimondii HOM05D007918 ORTHO05D010025 3.9e-16 88.6 123 40.7
AUR62008804 Chenopodium quinoa HOM05D000474 ORTHO05D001061 5.1e-16 88.2 73 60.3
MD05G1187800 Malus domestica HOM05D007918 ORTHO05D010025 8.7e-16 87.4 127 40.2
Aqoxy5G00124 Aquilegia oxysepala HOM05D007918 ORTHO05D010025 1.5e-15 86.7 122 43.4
FAN24G2847 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.5e-15 86.7 86 50.0
FAN27G3434 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.5e-15 86.7 81 51.9
FvH4_2g20371 Fragaria vesca HOM05D007918 ORTHO05D010025 1.9e-15 86.3 81 51.9
Gohir.A07G203900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 2.5e-15 85.9 123 39.8
FAN15G1752 Fragaria x ananassa HOM05D007918 ORTHO05D010025 3.3e-15 85.5 81 51.9
TPR.G20079 Trifolium pratense HOM05D007918 ORTHO05D010025 3.3e-15 85.5 109 46.8
Lalb_Chr20g0113551 Lupinus albus HOM05D007918 ORTHO05D010025 4.3e-15 85.1 74 52.7
Nn1g03000 Nelumbo nucifera HOM05D007918 ORTHO05D010025 4.3e-15 85.1 110 46.4
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.3e-15 85.1 126 42.9
Oeu015438.1 Olea europaea HOM05D007918 ORTHO05D010025 5.6e-15 84.7 122 41.8
ClCG06G001390 Citrullus lanatus HOM05D007918 ORTHO05D010025 1.3e-14 83.6 76 53.9
Gohir.D07G159200 Gossypium hirsutum HOM05D007918 ORTHO05D010025 1.6e-14 83.2 76 48.7
Gorai.001G182300 Gossypium raimondii HOM05D007918 ORTHO05D010025 2.1e-14 82.8 76 47.4
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.1e-14 82.8 68 54.4
SalBow4G0315 Salvia bowleyana HOM05D007918 ORTHO05D010025 6.2e-14 81.3 83 54.2
SGA_v2.0_scaffold1G00664 Striga asiatica HOM05D007918 ORTHO05D010025 8.1e-14 80.9 73 54.8
HanXRQChr04g0107631 Helianthus annuus HOM05D007918 ORTHO05D010025 1.1e-13 80.5 70 57.1
Lsat_1_v5_gn_0_19161 Lactuca sativa HOM05D007918 ORTHO05D010025 1.4e-13 80.1 71 56.3
Prupe.8G214800 Prunus persica HOM05D007918 ORTHO05D010025 1.4e-13 80.1 115 49.6
Sc05g0002860 Simmondsia chinensis HOM05D007918 ORTHO05D010025 3.1e-13 79.0 127 38.6
Lsat_1_v5_gn_8_91021 Lactuca sativa HOM05D007918 ORTHO05D010025 5.3e-13 78.2 72 55.6
DCAR_000468 Daucus carota HOM05D000121 ORTHO05D000102 2.0e-12 76.3 80 51.2
Ah.08g213630 Amaranthus hybridus HOM05D000474 ORTHO05D001061 2.6e-12 75.9 78 48.7
Migut.D00482 Erythranthe guttata HOM05D007918 ORTHO05D010025 2.6e-12 75.9 121 39.7
Gohir.A07G153050 Gossypium hirsutum HOM05D007918 ORTHO05D010025 2.6e-12 75.9 76 46.1
Cc01_g17750 Coffea canephora HOM05D007918 ORTHO05D010025 2.2e-11 72.8 82 48.8
SGA_v2.0_scaffold138G35181 Striga asiatica HOM05D007918 ORTHO05D010025 2.2e-11 72.8 78 47.4
DCAR_012594 Daucus carota HOM05D000121 ORTHO05D000102 6.4e-11 71.2 81 43.2
MBI07_g21057_MAGBIO Magnolia biondii HOM05D007918 ORTHO05D010025 6.4e-11 71.2 62 62.9
Sed0001064 Sechium edule HOM05D007918 ORTHO05D010025 3.2e-10 68.9 80 50.0
BcaB08g34905 Brassica carinata HOM05D007918 ORTHO05D010025 7.1e-10 67.8 66 51.5
CsaV3_6G007330 Cucumis sativus L. HOM05D007918 ORTHO05D010025 1.6e-09 66.6 126 38.9
BcaC07g41218 Brassica carinata HOM05D007918 ORTHO05D010025 2.1e-09 66.2 68 50.0
A09p58930 Brassica napus HOM05D007918 ORTHO05D010025 2.1e-09 66.2 68 50.0
BolC8t51784H Brassica oleracea HOM05D007918 ORTHO05D010025 2.1e-09 66.2 68 50.0
BraA09t41278Z Brassica rapa HOM05D007918 ORTHO05D010025 2.1e-09 66.2 68 50.0
Thhalv10002121m.g Eutrema salsugineum HOM05D007918 ORTHO05D010025 2.7e-09 65.9 66 50.0
BcaC04g22795 Brassica carinata HOM05D007918 ORTHO05D010025 4.6e-09 65.1 71 46.5
BolC9t54431H Brassica oleracea HOM05D007918 ORTHO05D010025 4.6e-09 65.1 71 46.5
Carub.0003s3475 Capsella rubella HOM05D007918 ORTHO05D010025 4.6e-09 65.1 119 37.0
BcaB07g31591 Brassica carinata HOM05D007918 ORTHO05D010025 7.8e-09 64.3 68 48.5
Sp3g33610 Schrenkiella parvula HOM05D007918 ORTHO05D010025 1.0e-08 63.9 66 48.5
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.3e-08 63.5 107 34.6
HPP92_005006 Vanilla planifolia HOM05D007918 ORTHO05D010025 1.7e-08 63.2 51 62.7
C09p15250 Brassica napus HOM05D007918 ORTHO05D010025 2.3e-08 62.8 69 44.9
AT2G20362 Arabidopsis thaliana HOM05D007918 ORTHO05D010025 3.0e-08 62.4 66 47.0
A09p12860 Brassica napus HOM05D007918 ORTHO05D010025 3.0e-08 62.4 107 33.6
C08p42250 Brassica napus HOM05D007918 ORTHO05D010025 3.0e-08 62.4 68 47.1
CARHR110890 Cardamine hirsuta HOM05D007918 ORTHO05D010025 5.1e-08 61.6 66 47.0
THA.LOC104814533 Tarenaya hassleriana HOM05D007918 ORTHO05D010025 5.1e-08 61.6 123 33.3
Sed0010398 Sechium edule HOM05D007918 ORTHO05D010025 1.1e-07 60.5 76 44.7
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 4.3e-07 58.5 87 39.1
Actinidia37556 Actinidia chinensis HOM05D000474 ORTHO05D001061 7.3e-07 57.8 55 50.9
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 1.6e-06 56.6 89 39.3
AL3G53330 Arabidopsis lyrata HOM05D007918 ORTHO05D010025 2.1e-06 56.2 115 34.8
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.8e-06 55.1 87 37.9
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 4.8e-06 55.1 59 47.5


User provided reference genes

Program Settings