Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 9.8e-228 793.1 397 100.0
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 2.0e-209 732.3 397 90.7
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.5e-199 699.5 400 86.5
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 6.8e-197 690.6 400 86.5
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 2.2e-195 685.6 399 85.0
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 2.2e-195 685.6 400 83.8
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 3.7e-195 684.9 400 85.0
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.2e-193 679.9 396 83.8
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.1e-193 679.1 400 84.5
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 7.8e-193 677.2 400 83.2
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.0e-192 676.8 401 83.5
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.3e-192 676.4 401 83.8
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 6.6e-192 674.1 401 83.8
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.1e-191 673.3 400 83.0
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.1e-191 673.3 401 83.0
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.9e-191 672.5 390 85.1
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 2.5e-191 672.2 400 82.0
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 3.6e-190 668.3 401 82.3
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.7e-190 667.9 400 81.8
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 4.7e-190 667.9 401 82.0
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 4.7e-190 667.9 401 82.5
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.1e-189 666.8 401 82.5
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.4e-189 665.6 405 80.5
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 6.8e-189 664.1 400 81.0
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 6.8e-189 664.1 424 77.1
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 8.9e-189 663.7 400 79.8
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 2.0e-188 662.5 398 82.9
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 2.6e-188 662.1 400 81.8
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 9.9e-188 660.2 397 81.1
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 9.9e-188 660.2 400 81.0
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 9.9e-188 660.2 400 80.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.3e-187 659.8 400 80.0
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 2.2e-187 659.1 401 82.3
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 2.9e-187 658.7 400 80.0
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 3.8e-187 658.3 400 81.2
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 4.9e-187 657.9 400 79.2
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 4.9e-187 657.9 400 78.8
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 6.4e-187 657.5 400 80.2
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.1e-186 656.8 396 81.3
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 1.1e-186 656.8 398 80.9
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 4.2e-186 654.8 397 79.3
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 4.2e-186 654.8 397 79.3
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 2.1e-185 652.5 401 80.5
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 2.7e-185 652.1 402 80.6
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 2.7e-185 652.1 400 81.0
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 3.5e-185 651.7 396 81.3
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 7.8e-185 650.6 398 82.2
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.0e-184 650.2 401 80.0
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 3.0e-184 648.7 400 79.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 5.1e-184 647.9 393 83.2
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 3.3e-183 645.2 399 80.5
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 7.3e-183 644.0 419 76.8
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 7.3e-183 644.0 402 80.1
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.2e-182 643.3 401 79.1
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.2e-182 643.3 400 80.8
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.2e-182 643.3 378 83.3
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.8e-182 642.1 393 79.9
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 6.2e-182 641.0 401 80.5
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.8e-181 639.4 400 78.2
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.3e-179 633.3 401 77.1
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 1.7e-179 632.9 432 74.3
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.7e-179 632.9 404 78.5
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 2.9e-179 632.1 401 78.1
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.9e-178 629.4 400 78.0
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.2e-178 628.2 391 79.3
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 7.1e-178 627.5 403 77.7
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 9.3e-178 627.1 398 76.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 6.0e-177 624.4 396 77.8
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 6.0e-177 624.4 406 77.6
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.3e-176 623.2 400 76.5
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 5.1e-176 621.3 403 77.7
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 6.2e-174 614.4 496 66.1
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.8e-173 612.8 410 75.9
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 3.1e-173 612.1 364 82.7
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.1e-173 612.1 404 76.2
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 5.3e-173 611.3 398 77.1
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 9.0e-173 610.5 403 75.4
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 9.0e-173 610.5 402 76.4
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.2e-172 610.1 401 76.6
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.5e-172 609.8 403 75.2
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 2.6e-172 609.0 401 76.3
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 3.4e-172 608.6 401 76.1
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 3.4e-172 608.6 401 76.3
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 3.4e-172 608.6 403 74.9
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 3.4e-172 608.6 404 75.7
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 9.9e-172 607.1 401 76.3
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 9.9e-172 607.1 400 76.2
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 9.9e-172 607.1 401 76.3
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.3e-171 606.7 553 59.5
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.7e-171 606.3 404 75.5
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 2.2e-171 605.9 403 74.2
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 4.9e-171 604.7 405 75.3
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 6.4e-171 604.4 362 81.2
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 1.4e-170 603.2 392 77.0
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 3.2e-170 602.1 399 75.7
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 4.2e-170 601.7 402 75.4
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 7.1e-170 600.9 401 75.3
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 7.1e-170 600.9 401 75.3
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.2e-169 600.1 417 72.9
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.6e-169 599.7 400 75.2
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 2.1e-169 599.4 380 77.9
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 2.7e-169 599.0 400 75.2
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.5e-169 598.6 452 70.4
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.0e-168 597.0 401 75.6
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.8e-168 596.3 380 78.2
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 3.0e-168 595.5 391 76.7
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 9.6e-167 590.5 395 73.4
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 5.8e-164 581.3 402 70.6
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.9e-163 578.9 443 67.0
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.9e-163 578.2 443 67.3
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-160 568.5 401 72.8
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.4e-159 564.3 353 79.3
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.0e-147 525.0 326 79.8
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.6e-145 518.8 292 85.6
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.0e-144 517.3 309 79.9
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 9.4e-138 494.2 317 80.4
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 3.8e-131 472.2 324 73.8
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 7.0e-125 451.4 342 71.6
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 1.2e-121 440.7 391 57.8
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 2.3e-120 436.4 374 55.9
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.2e-119 434.1 393 56.0
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.4e-117 426.4 260 82.7
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 4.0e-112 409.1 340 56.2
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.3e-99 366.7 235 80.4
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.2e-97 360.9 349 51.6
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 6.8e-88 328.6 289 53.6
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 1.5e-87 327.4 226 71.2
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.4e-77 294.3 334 45.5
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 2.7e-68 263.5 366 39.1
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.7e-62 244.2 229 59.8
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.4e-61 241.1 205 65.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 3.0e-59 233.4 335 40.3
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 6.2e-57 225.7 268 51.1
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 8.1e-57 225.3 171 68.4
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 5.5e-45 186.0 98 93.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.7e-33 146.7 80 88.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.8e-33 146.4 82 87.8
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 7.7e-31 139.0 132 59.8
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.6e-28 131.3 79 77.2
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 1.1e-21 108.6 104 52.9
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.5e-21 107.5 65 76.9
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 7.2e-21 105.9 91 62.6
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 1.1e-10 72.0 51 66.7
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.8e-08 64.7 42 76.2
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 2.6e-07 60.8 32 87.5
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 7.7e-07 59.3 36 75.0
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 8.5e-06 55.8 253 23.7


User provided reference genes

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