Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1268.8 598 100.0
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 7.6e-309 1063.1 583 85.1
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.1e-296 1022.7 583 81.8
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 2.5e-291 1005.0 583 81.1
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 4.3e-288 994.2 584 79.6
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 8.2e-287 989.9 577 79.4
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 6.9e-286 986.9 586 80.0
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 3.4e-285 984.6 556 81.5
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.3e-284 982.6 580 79.0
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 1.7e-284 982.2 575 80.7
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 1.1e-283 979.5 576 79.3
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.8e-281 972.2 585 78.1
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 5.1e-281 970.7 585 77.4
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 5.1e-281 970.7 576 78.8
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 5.1e-281 970.7 583 76.3
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 6.7e-281 970.3 579 78.4
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 4.4e-280 967.6 583 75.8
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 6.3e-279 963.8 559 80.1
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.2e-277 959.5 582 76.5
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.0e-277 958.7 591 76.3
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 3.5e-277 958.0 580 77.9
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 5.9e-277 957.2 574 76.3
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 1.7e-276 955.7 576 77.8
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.7e-276 955.7 562 78.5
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 2.9e-276 954.9 550 79.3
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 2.9e-276 954.9 575 77.6
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.1e-275 953.0 575 76.7
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.5e-275 952.6 583 76.5
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 1.9e-275 952.2 574 76.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.2e-275 951.0 577 76.3
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 4.2e-275 951.0 580 77.2
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 5.5e-275 950.7 579 77.2
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 9.4e-275 949.9 573 76.6
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.6e-274 949.1 580 77.1
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 2.1e-274 948.7 577 76.1
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 2.1e-274 948.7 576 76.9
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 4.7e-274 947.6 579 76.3
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 6.1e-274 947.2 583 75.6
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 3.0e-273 944.9 574 76.7
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 6.7e-273 943.7 575 76.9
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 8.8e-273 943.3 568 76.8
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 4.4e-272 941.0 574 75.4
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 2.8e-271 938.3 576 75.7
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 4.8e-271 937.6 577 76.4
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 4.8e-271 937.6 547 78.6
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.8e-270 935.6 579 75.8
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 2.4e-270 935.3 547 78.1
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 5.3e-270 934.1 574 74.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 2.0e-269 932.2 583 74.8
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 2.0e-269 932.2 577 75.2
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 2.6e-269 931.8 583 75.5
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.0e-268 929.9 609 72.6
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.3e-268 929.5 582 75.1
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.7e-268 929.1 559 76.2
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 2.3e-265 918.7 585 72.1
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 4.0e-265 917.9 545 78.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 4.4e-264 914.4 586 72.5
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 7.5e-264 913.7 599 70.3
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.1e-262 909.8 717 63.2
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 4.1e-262 907.9 558 74.0
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 4.1e-262 907.9 582 72.7
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 5.4e-262 907.5 574 73.0
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 7.0e-262 907.1 577 72.4
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 7.0e-262 907.1 577 72.4
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 1.6e-261 906.0 574 72.6
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.6e-261 906.0 558 74.0
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.0e-261 905.6 575 72.5
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 2.0e-261 905.6 575 72.3
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.7e-261 905.2 575 72.9
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 2.7e-261 905.2 589 71.8
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 3.5e-261 904.8 558 73.8
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 3.5e-261 904.8 551 77.0
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 3.8e-260 901.4 559 73.9
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.1e-259 899.8 687 64.3
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.5e-259 898.7 559 73.5
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 2.5e-259 898.7 559 73.5
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 8.0e-258 893.6 545 77.2
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.0e-257 893.3 573 71.4
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 8.8e-257 890.2 559 74.4
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 2.6e-256 888.6 576 71.0
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 9.8e-256 886.7 548 75.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.7e-255 885.9 576 72.7
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 6.3e-255 884.0 633 67.6
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.8e-254 882.5 577 71.8
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 7.0e-254 880.6 785 56.6
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 5.9e-253 877.5 541 73.8
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 5.9e-253 877.5 527 77.0
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.3e-252 876.3 550 73.5
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.7e-250 867.8 579 71.3
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.2e-247 859.0 579 70.6
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.9e-247 858.6 502 79.5
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.1e-238 830.1 583 68.4
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.6e-237 826.2 557 70.6
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 6.2e-226 787.7 583 66.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 3.4e-224 781.9 495 72.5
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 4.0e-217 758.4 518 69.7
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 7.6e-216 754.2 583 64.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 3.9e-212 741.9 493 70.2
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.3e-211 738.4 593 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.8e-209 733.0 552 61.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 6.9e-209 731.1 583 62.3
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.6e-205 719.9 451 74.3
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 7.4e-203 711.1 552 60.9
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 4.3e-195 685.3 580 56.4
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.1e-190 670.6 412 74.8
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 5.5e-190 668.3 574 55.6
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 9.6e-187 657.5 499 61.5
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.5e-179 633.6 464 66.2
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 2.5e-174 616.3 354 81.6
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 5.5e-174 615.1 465 64.3
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 7.2e-142 508.4 327 73.4
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 9.5e-118 428.3 466 50.0
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.3e-114 417.9 258 76.0
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 7.9e-88 328.9 190 78.4
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 7.4e-78 295.8 175 79.4
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 4.6e-72 276.6 210 64.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 7.9e-56 222.6 146 75.3
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.3e-55 221.1 130 78.5
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.6e-48 197.2 132 68.2
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 6.1e-48 196.4 342 36.0
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 8.2e-45 186.0 105 80.0
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.2e-43 182.2 162 53.1
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 6.5e-42 176.4 83 91.6
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.5e-41 174.5 116 70.7
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 5.2e-39 166.8 117 65.8
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.2e-33 147.1 103 70.9
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 3.4e-30 137.5 209 36.8
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.0e-26 125.9 72 80.6
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 8.0e-24 116.3 303 27.1
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.0e-23 115.9 66 80.3
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.2e-21 108.2 51 88.2
DCAR_006142 Daucus carota HOM05D001762 ORTHO05D001774 4.9e-21 107.1 470 25.7
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.9e-21 107.1 82 65.9
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 3.1e-20 104.4 248 27.0
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.0e-18 99.4 81 63.0
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 3.8e-18 97.4 138 41.3
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.6e-18 96.7 79 60.8
Lsat_1_v5_gn_2_96780 Lactuca sativa HOM05D001762 ORTHO05D001774 6.6e-18 96.7 210 30.5
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.3e-17 94.4 56 76.8
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.3e-17 94.4 56 76.8
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.3e-17 94.0 79 59.5
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.6e-17 93.6 56 76.8
Hund05747 Selenicereus undatus HOM05D001762 ORTHO05D001774 8.0e-16 89.7 224 26.3
Cpa.g.sc1971.1 Carica papaya HOM05D001762 ORTHO05D001774 1.4e-15 89.0 504 22.2
GSVIVG01016784001 Vitis vinifera HOM05D001762 ORTHO05D001774 2.3e-15 88.2 221 26.2
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 3.4e-14 84.3 72 58.3
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.8e-14 83.6 74 58.1
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.8e-14 83.6 74 58.1
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 8.6e-10 69.7 32 78.1
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 2.3e-07 61.6 269 25.3
Hund08711 Selenicereus undatus HOM05D001762 ORTHO05D001774 2.3e-07 61.6 109 28.4


User provided reference genes

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