Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 0.0e+00 1333.5 713 100.0
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 0.0e+00 1115.9 698 82.8
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.9e-298 1028.9 698 78.2
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.5e-295 1019.2 698 76.9
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 4.1e-293 1011.1 699 75.4
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 4.5e-292 1007.7 698 75.2
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.5e-290 1002.7 698 75.5
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 3.2e-290 1001.5 684 75.0
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 5.5e-290 1000.7 721 74.2
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 8.8e-288 993.4 698 72.9
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 2.0e-287 992.3 698 74.6
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 4.4e-287 991.1 698 74.1
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 2.2e-286 988.8 732 73.4
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.4e-285 986.1 698 73.5
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 7.0e-285 983.8 717 71.7
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 9.1e-285 983.4 698 71.6
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.0e-283 979.9 699 72.7
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.1e-281 972.2 698 72.2
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.4e-280 969.5 703 73.1
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 1.8e-280 969.1 697 72.3
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.0e-279 965.7 684 73.4
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 1.3e-278 963.0 698 70.9
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 4.9e-278 961.1 698 71.8
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 5.4e-277 957.6 696 72.3
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.9e-275 951.4 698 69.8
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 3.9e-275 951.4 708 72.0
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 6.6e-275 950.7 684 73.1
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 6.6e-275 950.7 698 69.8
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.5e-274 948.7 698 71.5
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 7.3e-274 947.2 685 72.4
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 2.8e-273 945.3 698 70.9
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 8.0e-273 943.7 698 69.3
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 3.1e-272 941.8 701 71.2
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 7.5e-271 937.2 698 71.3
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 9.8e-271 936.8 711 70.0
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 8.3e-270 933.7 698 69.1
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 1.6e-268 929.5 684 69.9
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.7e-268 928.7 698 68.8
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.5e-268 928.3 700 68.6
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.5e-266 922.2 698 68.9
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.1e-264 916.8 687 70.5
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 4.9e-262 907.9 698 69.2
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 3.2e-261 905.2 687 69.4
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 5.4e-261 904.4 688 68.8
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 1.0e-259 900.2 698 68.6
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.1e-258 896.7 698 67.2
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 7.3e-258 894.0 690 66.5
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 7.3e-258 894.0 696 69.8
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 7.3e-258 894.0 646 71.1
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.2e-257 893.3 699 66.8
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.7e-257 891.3 698 67.8
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 8.1e-257 890.6 700 67.3
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 6.8e-256 887.5 696 68.7
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 8.9e-256 887.1 714 66.4
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 8.9e-256 887.1 703 67.1
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 8.9e-256 887.1 700 67.6
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 9.9e-255 883.6 688 67.0
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 8.4e-254 880.6 700 67.0
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 8.4e-254 880.6 698 66.9
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.9e-253 879.4 675 69.2
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 2.4e-253 879.0 698 67.0
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.2e-253 878.6 672 68.8
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 7.1e-253 877.5 686 67.2
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 9.2e-253 877.1 718 66.7
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.6e-252 876.3 684 66.7
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 4.6e-252 874.8 713 65.2
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 6.0e-252 874.4 691 66.1
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 2.3e-251 872.5 714 65.1
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.0e-251 872.1 717 66.8
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 6.6e-251 870.9 698 65.8
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 1.5e-250 869.8 698 65.6
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.9e-250 869.4 684 67.3
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 3.3e-250 868.6 691 66.6
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.2e-249 866.7 684 65.9
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.4e-248 862.4 750 64.3
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 4.0e-248 861.7 698 66.3
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 1.2e-247 860.1 683 66.8
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 2.0e-247 859.4 706 65.9
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.0e-247 859.4 652 69.2
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 9.9e-247 857.1 698 65.9
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.9e-247 857.1 692 67.2
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 2.4e-245 852.4 712 63.2
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 3.2e-245 852.0 698 65.0
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 7.8e-244 847.4 698 64.8
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 7.8e-244 847.4 668 67.8
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 3.0e-243 845.5 678 65.2
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 6.6e-243 844.3 801 58.6
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.3e-242 842.0 694 63.1
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 5.6e-242 841.3 699 64.2
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.6e-241 838.6 692 66.2
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 4.8e-241 838.2 663 67.3
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 6.2e-241 837.8 687 64.3
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.4e-240 836.6 646 68.4
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 4.0e-240 835.1 669 64.7
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 5.3e-240 834.7 699 63.9
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 6.9e-240 834.3 608 70.9
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 1.2e-239 833.6 715 63.8
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 1.2e-239 833.6 698 63.9
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.6e-239 832.4 645 66.5
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 8.4e-238 827.4 730 61.5
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 4.2e-237 825.1 699 64.9
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.6e-236 823.2 685 64.7
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 1.0e-235 820.5 684 63.5
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 5.1e-235 818.1 802 57.2
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 6.6e-235 817.8 708 62.0
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.4e-232 809.3 684 61.7
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 9.0e-232 807.4 660 64.4
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.2e-231 807.0 660 64.4
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 1.7e-230 803.1 659 63.9
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 2.9e-230 802.4 631 67.0
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 6.4e-230 801.2 684 61.5
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 6.0e-228 794.7 698 62.6
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 7.9e-228 794.3 670 61.9
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 3.0e-227 792.3 645 63.4
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 2.5e-226 789.3 666 63.5
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.5e-226 789.3 619 67.7
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 9.6e-226 787.3 668 63.5
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 2.1e-225 786.2 715 59.2
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 2.1e-225 786.2 668 63.3
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 2.1e-225 786.2 668 63.3
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 4.0e-224 781.9 717 60.8
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 2.0e-223 779.6 644 65.4
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 2.9e-222 775.8 691 57.9
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.1e-221 773.9 692 58.5
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.7e-220 769.2 686 58.7
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 5.1e-219 765.0 700 60.0
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 6.5e-214 748.0 690 57.4
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 4.2e-213 745.3 673 60.3
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 1.6e-212 743.4 626 62.5
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 3.6e-212 742.3 701 59.8
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 2.3e-211 739.6 694 58.1
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 1.6e-209 733.4 727 57.2
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 6.5e-206 721.5 704 56.5
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.4e-200 703.0 750 54.5
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.1e-192 674.5 660 57.3
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 1.0e-190 671.0 652 56.4
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 2.3e-187 659.8 701 54.5
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 3.2e-173 612.8 550 61.5
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 4.2e-173 612.5 538 59.3
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.2e-155 552.4 503 59.0
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-149 534.3 584 53.6
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 9.2e-136 488.4 432 61.8
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 2.1e-132 477.2 701 41.7
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 6.7e-118 429.1 356 62.6
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 9.3e-112 408.7 313 70.6
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 6.0e-111 406.0 446 53.1
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.1e-104 385.2 352 59.9
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 6.7e-102 375.9 361 54.0
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.1e-99 368.6 351 57.5
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.4e-99 368.2 332 63.0
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 2.1e-95 354.4 515 44.1
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 3.8e-89 333.6 307 56.0
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.7e-76 291.6 425 43.5
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 1.8e-67 261.5 701 32.7
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 3.4e-61 240.7 385 42.3
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 4.1e-59 233.8 309 48.2
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.6e-58 231.9 156 78.2
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.0e-57 226.9 263 52.1
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-55 221.9 298 45.3
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.4e-51 208.8 653 28.0
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 2.1e-47 194.9 269 43.9
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.0e-46 191.0 187 56.1
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 1.3e-44 185.7 202 55.4
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 7.8e-42 176.4 204 53.9
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 8.6e-33 146.4 117 62.4
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 3.3e-32 144.4 96 76.0
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 7.3e-32 143.3 135 54.1
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.4e-30 139.0 156 50.6
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.9e-29 132.9 88 71.6
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-24 119.4 195 40.5
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 3.3e-24 117.9 79 73.4
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-23 115.5 78 73.1
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-23 115.5 78 73.1
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 8.4e-20 103.2 304 31.9
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 3.5e-18 97.8 107 49.5
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 3.5e-18 97.8 67 74.6
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.2e-13 82.8 153 37.9
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.4e-13 80.9 118 43.2
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 4.4e-13 80.9 86 53.5
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 5.4e-11 73.9 124 35.5
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 1.0e-09 69.7 178 32.0
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.9e-08 65.5 52 65.4


User provided reference genes

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