Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.8e-274 947.6 484 100.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.2e-229 798.9 484 83.7
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.2e-196 688.7 486 73.3
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.7e-194 682.9 484 71.7
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.6e-192 676.4 484 71.3
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.1e-192 676.0 484 71.5
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.7e-192 674.9 486 71.6
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 6.2e-192 674.5 501 71.1
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.4e-191 673.3 484 71.3
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.2e-190 670.2 484 71.5
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 3.4e-190 668.7 493 70.0
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.1e-188 663.7 484 70.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.4e-183 646.7 485 69.1
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.4e-183 646.7 486 67.7
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.4e-183 646.0 489 69.5
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.0e-183 645.2 460 70.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 7.6e-182 641.0 490 67.1
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 8.4e-181 637.5 492 67.1
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.4e-180 636.0 461 71.6
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 3.5e-179 632.1 460 69.3
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 6.6e-178 627.9 487 67.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 6.2e-176 621.3 491 65.6
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.5e-174 616.7 485 67.0
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.2e-173 612.8 492 66.9
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 6.4e-173 611.3 495 65.1
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 4.2e-172 608.6 484 62.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.6e-171 605.1 489 65.2
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 5.1e-170 601.7 484 63.4
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.3e-169 599.0 484 63.4
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.6e-169 598.2 505 63.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.1e-167 594.0 485 63.3
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.4e-167 593.6 485 64.9
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.1e-167 592.4 490 63.7
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.0e-166 589.7 484 61.6
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.0e-166 589.7 484 63.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.4e-166 589.0 490 63.5
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 6.4e-165 584.7 484 61.0
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-164 583.9 515 60.2
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 2.4e-164 582.8 459 65.1
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.2e-164 582.4 493 63.7
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 9.3e-164 580.9 484 62.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.2e-163 580.5 494 61.9
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.2e-163 580.5 484 61.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 4.6e-163 578.6 485 61.9
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 6.0e-163 578.2 485 63.1
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.5e-161 573.5 499 61.7
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 7.4e-161 571.2 499 61.3
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 5.3e-159 565.1 503 60.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 6.9e-159 564.7 484 58.7
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 7.6e-158 561.2 418 67.7
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.6e-158 561.2 476 60.9
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-157 560.1 470 61.3
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.9e-157 559.3 491 59.7
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.1e-156 557.4 503 60.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.9e-156 556.6 497 60.0
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.4e-156 556.2 486 58.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.2e-156 555.8 486 58.4
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 9.3e-156 554.3 492 59.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 3.5e-155 552.4 488 58.2
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.5e-155 552.4 511 58.9
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.0e-154 550.8 507 57.6
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 6.7e-154 548.1 492 60.0
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.7e-154 547.7 492 60.6
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.9e-153 546.6 484 58.5
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.3e-152 543.9 491 60.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.8e-151 540.0 484 58.3
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 6.9e-151 538.1 494 61.3
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 2.0e-150 536.6 466 62.0
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.4e-150 535.8 486 57.8
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 4.5e-150 535.4 442 62.4
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 7.6e-150 534.6 485 58.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.0e-149 534.3 462 60.2
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.7e-149 533.5 489 59.5
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.4e-148 530.4 443 63.4
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 2.5e-148 529.6 484 56.8
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.5e-148 529.6 495 58.8
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 4.2e-148 528.9 486 57.6
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.6e-147 526.9 492 59.3
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 3.5e-147 525.8 485 57.3
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.6e-147 525.4 484 57.9
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 6.0e-147 525.0 492 57.3
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.9e-147 524.6 486 56.2
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 2.3e-146 523.1 430 65.6
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 6.7e-146 521.5 478 58.2
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 6.7e-146 521.5 486 56.2
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 4.3e-145 518.8 486 58.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 6.3e-144 515.0 507 56.8
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 6.9e-143 511.5 488 57.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 9.0e-143 511.1 433 61.4
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-142 510.8 486 57.0
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-142 510.8 487 56.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.2e-142 510.8 466 57.7
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.5e-142 510.4 486 57.8
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 4.5e-142 508.8 484 56.0
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 5.9e-142 508.4 486 57.2
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.3e-141 507.3 586 50.2
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.2e-141 506.5 491 54.0
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 2.2e-141 506.5 494 57.3
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 2.9e-141 506.1 493 54.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 3.8e-141 505.8 488 55.3
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 5.5e-140 501.9 509 54.0
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 7.2e-140 501.5 486 56.6
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.1e-139 500.0 486 54.3
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 2.7e-139 499.6 486 54.1
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.7e-139 499.6 546 53.3
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 4.6e-139 498.8 493 54.2
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 6.1e-139 498.4 408 64.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.0e-138 497.7 517 52.8
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.0e-138 497.7 532 52.8
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.4e-138 497.3 490 55.7
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-138 497.3 532 52.8
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 5.1e-138 495.4 485 55.3
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.5e-137 493.0 487 55.2
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 3.3e-137 492.7 485 55.5
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.8e-136 489.6 484 54.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 6.5e-133 478.4 492 52.8
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 7.2e-132 474.9 453 58.9
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 8.8e-130 468.0 485 53.4
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.0e-126 456.8 401 56.9
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-126 456.4 460 56.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 5.0e-125 452.2 484 52.3
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.7e-123 446.4 484 50.0
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.1e-119 434.5 490 50.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.8e-119 433.7 453 52.3
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.8e-119 433.7 458 51.1
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.5e-118 429.1 390 55.6
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 9.4e-116 421.4 501 50.7
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.0e-113 413.7 485 48.7
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.6e-113 413.3 450 53.8
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.8e-104 383.3 491 48.7
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 5.4e-103 379.0 455 46.8
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.0e-102 377.1 396 54.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 5.9e-102 375.6 486 45.3
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 7.7e-102 375.2 412 51.9
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 2.8e-91 340.1 485 45.8
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 4.7e-91 339.3 216 73.1
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 6.8e-90 335.5 216 72.7
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.4e-87 327.0 446 42.2
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 6.0e-86 322.4 343 52.5
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.9e-85 319.7 410 48.3
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 3.6e-83 313.2 451 38.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 4.7e-83 312.8 372 46.2
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 7.5e-81 305.4 341 45.7
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.9e-80 302.8 341 45.5
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 7.0e-79 298.9 222 62.2
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 8.1e-75 285.4 297 48.8
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.1e-66 258.5 176 68.8
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.6e-54 218.0 268 49.3
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.6e-52 208.8 165 64.8
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 2.0e-49 201.1 315 42.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.9e-48 196.4 134 66.4
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.3e-45 188.3 237 46.8
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.7e-40 171.4 247 37.2
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 9.0e-34 149.1 244 31.1
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.2e-31 140.2 190 38.9
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 6.1e-30 136.3 95 66.3
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 3.9e-29 133.7 228 40.4
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 3.1e-26 124.0 76 72.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.1e-23 115.5 124 59.7
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.2e-23 112.8 91 59.3
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.9e-18 96.3 60 71.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.7e-16 91.7 114 49.1
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.6e-12 77.8 93 46.2
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 4.1e-10 70.5 43 74.4
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.0e-09 68.2 70 52.9
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 3.8e-08 63.9 59 59.3
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 2.5e-07 61.2 48 50.0
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 4.7e-06 57.0 78 47.4


User provided reference genes

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