Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 2.0e-149 532.7 334 100.0
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 6.5e-108 394.8 333 81.1
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 7.2e-107 391.3 333 81.1
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.1e-106 389.8 335 78.5
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.0e-105 387.5 338 79.0
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.2e-105 385.2 354 73.2
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 6.7e-105 384.8 348 75.9
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 6.7e-105 384.8 348 75.9
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.6e-104 382.9 355 73.8
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.3e-104 382.5 354 73.2
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 5.7e-104 381.7 333 77.8
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 5.7e-104 381.7 333 79.0
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.3e-103 380.6 331 77.0
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.3e-103 380.6 337 78.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.7e-103 379.0 344 75.9
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.8e-103 378.6 339 77.3
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.4e-102 377.1 339 77.0
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 3.1e-102 375.9 338 78.1
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 3.1e-102 375.9 355 73.0
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.2e-101 374.0 334 76.9
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.7e-101 372.9 296 84.1
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 6.5e-100 368.2 337 75.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 4.2e-99 365.5 352 72.4
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.6e-98 363.6 348 72.7
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.6e-98 363.6 337 74.8
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.7e-98 362.8 369 69.9
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.4e-97 360.5 339 73.7
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.4e-97 360.5 339 73.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.3e-97 359.8 347 70.6
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 6.8e-97 358.2 343 73.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 8.8e-97 357.8 346 71.4
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.2e-96 357.5 373 68.9
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.4e-96 355.9 336 75.6
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 7.5e-96 354.8 342 72.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 7.5e-96 354.8 344 73.0
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.3e-95 354.0 336 75.3
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 4.8e-95 352.1 352 62.8
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 6.3e-95 351.7 336 72.0
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 6.3e-95 351.7 367 68.4
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.1e-94 349.0 278 83.1
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 7.0e-94 348.2 339 72.0
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.0e-94 348.2 336 74.1
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.2e-93 347.4 342 70.2
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.5e-93 345.5 396 51.5
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.0e-92 344.4 336 70.8
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.7e-92 343.6 374 64.4
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.7e-92 343.6 336 71.7
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 2.9e-92 342.8 344 71.2
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 8.5e-92 341.3 342 71.3
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 8.5e-92 341.3 350 68.0
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.5e-92 341.3 337 71.8
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.5e-91 340.5 339 69.3
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.9e-91 340.1 344 70.3
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.5e-91 339.7 338 72.2
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.5e-91 339.7 333 71.2
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.2e-91 339.3 342 70.8
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 7.2e-91 338.2 335 71.0
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.6e-90 337.0 344 70.3
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.1e-90 336.7 293 78.2
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.6e-90 335.9 344 70.3
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.4e-89 334.0 322 73.3
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 5.2e-89 332.0 335 70.7
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.2e-88 330.9 335 69.3
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.6e-88 329.7 287 77.4
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.4e-88 329.3 331 69.8
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.4e-88 329.3 287 78.0
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.4e-88 328.9 287 77.7
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 9.8e-88 327.8 339 67.3
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.3e-87 327.4 344 68.3
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.8e-87 326.2 286 78.3
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.7e-87 325.9 327 71.9
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.7e-87 325.9 347 67.4
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 8.3e-87 324.7 353 67.4
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.1e-86 324.3 333 66.7
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.1e-86 324.3 328 68.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.1e-86 322.8 333 65.5
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 7.7e-85 318.2 294 73.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.0e-84 315.5 339 67.0
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 3.3e-83 312.8 349 66.2
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 4.7e-82 308.9 237 67.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.8e-81 307.0 299 72.6
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 3.0e-81 306.2 333 60.4
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.2e-80 304.3 293 64.8
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.6e-80 303.1 247 65.2
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 4.4e-80 302.4 335 65.7
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 5.7e-80 302.0 348 63.2
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 3.7e-79 299.3 219 69.9
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 8.3e-79 298.1 305 68.9
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.1e-78 297.7 310 71.0
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.1e-78 295.8 330 65.8
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 5.4e-78 295.4 339 65.2
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 7.0e-78 295.0 328 66.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.2e-77 294.3 224 69.2
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 5.0e-76 288.9 310 69.4
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 8.6e-76 288.1 332 65.7
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.3e-75 286.2 219 69.4
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.6e-74 283.9 216 68.5
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 8.0e-74 281.6 338 59.2
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 2.6e-72 276.6 332 63.6
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-69 267.7 331 61.3
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.7e-69 266.5 333 61.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 7.8e-69 265.0 287 66.9
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 3.0e-68 263.1 415 53.3
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 3.3e-67 259.6 347 57.6
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.2e-66 257.7 234 79.1
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-66 257.7 331 60.1
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 6.2e-66 255.4 187 70.6
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.2e-66 255.4 360 42.8
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 6.8e-65 251.9 336 59.8
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.2e-64 251.1 316 46.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-60 236.9 333 58.3
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.2e-55 220.3 327 56.0
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 7.8e-53 211.8 194 85.6
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.8e-49 200.7 264 62.9
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 5.2e-49 199.1 191 83.2
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 8.9e-49 198.4 173 60.7
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 7.6e-48 195.3 178 60.7
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.2e-47 193.7 240 68.8
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 3.5e-45 186.4 214 51.4
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 8.7e-44 181.8 214 44.9
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.0e-36 158.3 278 52.9
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 6.7e-36 155.6 286 51.0
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.8e-33 147.5 120 59.2
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.9e-30 137.5 142 91.5
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.4e-30 137.1 159 81.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.2e-30 136.3 173 43.9
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-28 130.6 173 42.8
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-26 124.4 192 39.6
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.7e-23 114.4 128 90.6
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.9e-23 113.6 86 60.5
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 3.5e-21 106.7 134 68.7
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 6.0e-21 105.9 107 47.7
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-19 101.3 81 60.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.6e-18 97.8 84 59.5
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 8.2e-18 95.5 63 71.4
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.3e-17 92.8 122 87.7
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.0e-12 77.0 127 79.5
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 6.3e-10 69.3 53 64.2
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.4e-09 68.2 43 69.8
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 3.1e-09 67.0 46 78.3
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 4.5e-08 63.2 56 60.7
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.7e-07 61.2 54 53.7
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 3.8e-07 60.1 51 54.9
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 6.5e-07 59.3 58 48.3
Dinv15974 Davidia involucrata HOM05D046031 ORTHO05D006215 2.5e-06 57.4 37 81.1
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 9.4e-06 55.5 37 67.6


User provided reference genes

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