Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 6.4e-167 590.9 343 100.0
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 3.6e-130 468.8 346 75.4
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 3.4e-128 462.2 347 75.8
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 8.4e-127 457.6 343 71.4
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 8.7e-124 447.6 344 70.9
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 1.1e-123 447.2 347 78.4
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 6.2e-122 441.4 349 70.2
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.3e-119 433.7 349 69.1
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.7e-119 433.3 349 69.3
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 1.1e-118 430.6 347 74.6
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 4.6e-117 425.2 351 77.5
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 5.1e-116 421.8 353 72.5
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 5.1e-116 421.8 351 77.2
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.1e-115 420.6 402 65.2
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 7.4e-115 417.9 349 68.8
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 7.4e-115 417.9 350 73.4
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 1.3e-114 417.2 348 73.0
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 3.7e-114 415.6 349 69.3
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 4.8e-114 415.2 373 65.7
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 1.1e-113 414.1 350 70.9
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.1e-113 414.1 367 64.0
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 7.6e-112 407.9 347 68.0
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 7.6e-112 407.9 344 67.2
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 1.7e-111 406.8 366 68.3
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.4e-110 403.7 349 66.2
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 3.2e-110 402.5 350 63.7
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 3.2e-110 402.5 358 67.6
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 5.5e-110 401.7 356 65.7
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 1.2e-109 400.6 350 64.3
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 1.2e-109 400.6 350 64.3
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 1.6e-109 400.2 354 65.3
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 1.6e-109 400.2 354 65.3
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.7e-109 399.4 356 64.9
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 3.5e-109 399.1 349 64.2
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 6.0e-109 398.3 347 71.5
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 1.3e-108 397.1 349 73.6
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.8e-108 396.7 356 64.0
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 3.0e-108 396.0 351 67.2
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 3.9e-108 395.6 351 63.2
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 3.9e-108 395.6 357 63.6
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 6.7e-108 394.8 345 66.1
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 8.7e-108 394.4 344 68.3
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.1e-107 394.0 354 61.9
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.5e-107 393.7 356 62.6
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 1.5e-107 393.7 348 73.0
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 2.5e-107 392.9 352 63.4
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 2.8e-106 389.4 356 62.6
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.8e-106 389.4 356 62.6
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.8e-106 389.4 356 62.6
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 4.8e-106 388.7 351 72.4
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 3.1e-105 386.0 355 67.0
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 5.3e-105 385.2 354 69.2
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 6.9e-105 384.8 352 67.3
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 6.9e-105 384.8 351 67.0
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.9e-105 384.8 356 62.1
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 1.5e-104 383.6 353 62.6
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 2.0e-104 383.3 354 64.7
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 4.5e-104 382.1 362 65.7
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 5.9e-104 381.7 351 66.4
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 6.5e-103 378.3 296 75.3
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 1.9e-102 376.7 344 61.3
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 3.2e-102 375.9 353 64.0
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 5.5e-102 375.2 346 65.3
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 1.6e-101 373.6 355 63.1
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.1e-101 373.2 353 65.2
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 2.7e-101 372.9 345 63.5
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 3.6e-101 372.5 297 74.7
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 8.8e-100 367.9 345 63.8
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 2.5e-99 366.3 355 65.9
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 4.8e-98 362.1 349 65.9
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 6.9e-97 358.2 335 63.6
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 9.1e-97 357.8 353 58.6
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 3.4e-96 355.9 359 66.6
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 2.9e-95 352.8 359 61.8
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 1.4e-94 350.5 358 65.6
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 5.5e-94 348.6 352 61.4
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 7.2e-94 348.2 343 61.8
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 6.1e-93 345.1 351 59.0
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 8.8e-92 341.3 196 85.7
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 7.4e-91 338.2 343 60.1
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 4.8e-90 335.5 365 58.4
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.4e-89 334.0 341 60.1
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 4.1e-89 332.4 427 53.2
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 7.0e-89 331.6 339 58.7
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 5.9e-88 328.6 369 62.1
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 7.7e-88 328.2 346 58.7
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 7.7e-88 328.2 252 76.6
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 3.8e-87 325.9 190 84.7
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 7.2e-86 321.6 362 53.6
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 8.0e-85 318.2 389 58.1
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 6.7e-84 315.1 343 58.3
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.5e-83 313.9 288 60.8
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 7.4e-83 311.6 349 52.7
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 3.1e-81 306.2 342 59.6
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 1.2e-80 304.3 282 64.2
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 5.9e-80 302.0 346 54.9
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 1.3e-79 300.8 278 64.7
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.9e-79 299.7 275 64.4
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 1.9e-78 297.0 275 63.3
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.0e-76 291.2 323 54.8
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 1.5e-70 270.8 308 57.1
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.6e-69 267.3 281 68.7
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 1.4e-65 254.2 231 59.7
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 1.0e-60 238.0 197 61.9
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 1.0e-60 238.0 248 61.3
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 2.0e-51 207.2 244 47.5
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 3.4e-51 206.5 248 45.2
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 2.0e-48 197.2 173 54.3
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 2.3e-47 193.7 257 44.7
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 9.5e-46 188.3 191 49.2
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 4.6e-24 116.3 80 66.2
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 2.1e-21 107.5 131 43.5
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 2.8e-21 107.1 72 72.2
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 9.0e-20 102.1 133 42.1
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 9.9e-19 98.6 192 33.3
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.9e-17 94.4 61 80.3
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 3.5e-16 90.1 190 32.6
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.7e-15 87.8 92 56.5
Solyc05g013480.4 Solanum lycopersicum HOM05D006540 ORTHO05D008202 6.6e-15 85.9 194 51.0
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 3.3e-14 83.6 50 88.0
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 3.8e-10 70.1 44 65.9
TAR623G1425 Trochodendron aralioides HOM05D000432 ORTHO05D000320 1.8e-07 61.2 92 46.7


User provided reference genes

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