Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 0.0e+00 1681.8 1010 100.0
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 3.7e-239 832.4 903 57.7
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 9.1e-222 774.6 885 58.2
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 5.5e-219 765.4 903 58.1
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 1.3e-215 754.2 934 53.5
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 3.0e-204 716.5 915 51.8
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 3.2e-198 696.4 1072 49.4
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 2.6e-192 676.8 934 51.7
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 4.3e-187 659.4 920 50.8
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 4.0e-185 652.9 960 48.9
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 2.7e-181 640.2 926 50.6
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 1.3e-180 637.9 926 50.5
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 8.7e-180 635.2 1016 47.4
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 5.8e-176 622.5 862 49.2
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 7.1e-174 615.5 931 49.4
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 7.8e-173 612.1 1061 46.4
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 5.3e-169 599.4 915 49.4
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 3.4e-168 596.7 891 47.9
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 3.4e-168 596.7 575 59.5
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.1e-166 591.7 808 50.2
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 4.9e-159 566.2 1062 45.8
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 5.3e-153 546.2 715 50.8
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 1.0e-151 542.0 1054 45.5
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 1.4e-150 538.1 1064 44.3
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 6.7e-148 529.3 1057 42.3
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 1.5e-147 528.1 849 48.2
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 9.7e-147 525.4 1002 44.5
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.3e-146 525.0 896 46.0
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 3.8e-143 513.5 858 46.2
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 1.9e-142 511.1 907 42.7
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 4.2e-142 510.0 889 44.7
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 5.5e-142 509.6 892 45.9
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.6e-141 508.1 917 42.2
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 1.5e-139 501.5 963 45.0
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 2.5e-139 500.7 918 43.9
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 3.3e-139 500.4 943 41.3
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 5.7e-139 499.6 1076 40.1
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 1.3e-138 498.4 938 43.7
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 5.9e-136 489.6 1049 40.9
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 4.2e-134 483.4 890 45.2
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 3.0e-132 477.2 1043 40.0
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 1.5e-131 474.9 890 45.5
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.5e-131 474.9 876 45.2
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 7.4e-131 472.6 872 41.7
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 5.3e-129 466.5 910 44.3
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 5.9e-128 463.0 872 43.2
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 2.9e-127 460.7 884 44.7
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 1.9e-126 458.0 725 48.1
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 1.6e-125 454.9 884 43.3
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 4.7e-125 453.4 1056 42.0
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 2.8e-122 444.1 840 44.2
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 1.1e-121 442.2 720 47.5
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 2.4e-121 441.0 927 41.7
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 6.1e-117 426.4 976 39.4
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 1.5e-115 421.8 890 40.3
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 9.8e-115 419.1 938 40.1
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 2.8e-114 417.5 823 40.1
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 2.4e-113 414.5 892 40.5
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 5.9e-112 409.8 850 38.7
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 5.9e-112 409.8 894 40.4
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 3.8e-111 407.1 928 38.6
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 8.5e-111 406.0 948 37.3
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.6e-109 401.7 780 41.4
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.3e-106 392.1 876 40.8
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 3.7e-106 390.6 909 40.8
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 1.6e-104 385.2 898 39.3
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 1.5e-102 378.6 691 46.0
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 2.3e-100 371.3 806 40.4
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 3.0e-100 370.9 899 39.3
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 2.2e-98 364.8 918 36.9
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 2.9e-95 354.4 820 38.5
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 2.1e-93 348.2 908 37.7
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 2.1e-93 348.2 731 44.2
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.2e-91 342.4 872 39.1
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 1.7e-90 338.6 906 34.9
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 2.9e-90 337.8 503 47.1
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 8.3e-90 336.3 889 38.0
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 6.2e-85 320.1 974 36.4
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 7.5e-83 313.2 941 36.3
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 1.2e-75 289.3 913 37.5
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 6.4e-74 283.5 795 35.7
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 6.0e-72 276.9 1079 33.4
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 1.3e-66 259.2 418 43.1
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 3.8e-66 257.7 729 37.6
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 1.9e-65 255.4 892 33.6
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 4.6e-64 250.8 1010 34.2
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 6.0e-64 250.4 935 31.6
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 3.6e-61 241.1 936 33.8
Lj6A812T43 Lonicera japonica HOM05D002002 ORTHO05D008797 4.8e-61 240.7 364 43.4
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 3.1e-60 238.0 859 35.7
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 7.9e-56 223.4 775 31.6
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 3.0e-55 221.5 908 31.7
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 1.5e-54 219.2 885 31.3
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 1.2e-51 209.5 933 31.2
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 2.0e-51 208.8 885 32.0
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 4.5e-51 207.6 735 31.2
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 6.7e-47 193.7 702 36.5
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 4.9e-42 177.6 908 30.4
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 5.5e-41 174.1 662 34.9
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 7.1e-41 173.7 906 30.2
TPR.G3025 Trifolium pratense HOM05D002002 ORTHO05D008797 4.6e-40 171.0 275 44.4
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 7.9e-40 170.2 946 30.2
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 3.1e-36 158.3 832 30.4
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 3.1e-36 158.3 548 34.9
Solyc05g013490.4 Solanum lycopersicum HOM05D002002 ORTHO05D008797 2.2e-34 152.1 394 40.6
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 8.4e-34 150.2 528 35.0
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 5.9e-27 127.5 144 54.9
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 2.7e-24 118.6 224 45.5
GSVIVG01005755001 Vitis vinifera HOM05D002002 ORTHO05D008797 9.7e-22 110.2 70 88.6
TPR.G1066 Trifolium pratense HOM05D002002 ORTHO05D008797 7.2e-17 94.0 126 51.6
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 3.0e-15 88.6 113 50.4
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 5.1e-15 87.8 192 38.5
TPR.G24664 Trifolium pratense HOM05D002002 ORTHO05D008797 9.7e-14 83.6 74 60.8
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 6.3e-13 80.9 887 23.4
Lj6P812T17 Lonicera japonica HOM05D002002 ORTHO05D008797 9.1e-12 77.0 149 52.3
Lsat_1_v5_gn_0_41981 Lactuca sativa HOM05D002002 ORTHO05D008797 5.0e-10 71.2 115 40.0
TPR.G3088 Trifolium pratense HOM05D001978 ORTHO05D010457 4.4e-06 58.2 186 37.1


User provided reference genes

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