Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 2.9e-48 194.9 97 100.0
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 4.3e-20 101.3 108 62.0
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.1e-15 86.7 92 57.6
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.4e-15 86.3 98 53.1
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 4.2e-15 84.7 93 54.8
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 9.3e-15 83.6 94 54.3
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 7.9e-14 80.5 57 68.4
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.0e-13 80.1 101 51.5
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 1.0e-13 80.1 90 54.4
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 1.3e-13 79.7 77 59.7
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.0e-13 78.6 82 54.9
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 1.1e-12 76.6 57 64.9
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.5e-12 76.3 91 53.8
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 1.5e-12 76.3 91 52.7
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 1.9e-12 75.9 49 67.3
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 1.9e-12 75.9 85 51.8
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 3.3e-12 75.1 51 70.6
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 5.7e-12 74.3 97 44.3
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 5.7e-12 74.3 88 50.0
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 7.4e-12 73.9 88 52.3
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.3e-11 73.2 80 50.0
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 1.6e-11 72.8 87 47.1
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 2.2e-11 72.4 73 54.8
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 2.8e-11 72.0 56 58.9
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 3.7e-11 71.6 84 45.2
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 3.7e-11 71.6 89 49.4
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 4.8e-11 71.2 85 49.4
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 4.8e-11 71.2 89 48.3
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 4.8e-11 71.2 81 49.4
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 6.3e-11 70.9 77 48.1
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 6.3e-11 70.9 84 45.2
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 6.3e-11 70.9 78 48.7
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 8.2e-11 70.5 95 47.4
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 1.4e-10 69.7 57 61.4
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.8e-10 69.3 98 44.9
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 1.8e-10 69.3 98 44.9
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 1.8e-10 69.3 98 44.9
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 2.4e-10 68.9 93 45.2
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 2.4e-10 68.9 56 57.1
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 2.4e-10 68.9 56 57.1
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 3.1e-10 68.6 83 53.0
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 3.1e-10 68.6 99 42.4
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 4.1e-10 68.2 56 57.1
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 4.1e-10 68.2 83 50.6
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 4.1e-10 68.2 56 58.9
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 4.1e-10 68.2 48 75.0
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 4.1e-10 68.2 94 40.4
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 6.9e-10 67.4 43 72.1
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 6.9e-10 67.4 43 72.1
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.2e-09 66.6 87 50.6
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.2e-09 66.6 85 47.1
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 1.2e-09 66.6 81 48.1
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 1.2e-09 66.6 95 45.3
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 1.2e-09 66.6 77 49.4
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.5e-09 66.2 56 62.5
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.5e-09 66.2 78 53.8
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 2.0e-09 65.9 56 53.6
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 2.0e-09 65.9 68 54.4
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 2.0e-09 65.9 86 50.0
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 2.6e-09 65.5 56 53.6
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 2.6e-09 65.5 83 50.6
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 5.9e-09 64.3 72 50.0
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 7.6e-09 63.9 75 49.3
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 7.6e-09 63.9 86 46.5
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 7.6e-09 63.9 86 46.5
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 7.6e-09 63.9 86 46.5
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 7.6e-09 63.9 86 46.5
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 7.6e-09 63.9 86 46.5
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 1.0e-08 63.5 99 42.4
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 1.0e-08 63.5 75 52.0
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 1.0e-08 63.5 53 58.5
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.3e-08 63.2 55 60.0
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 1.3e-08 63.2 54 61.1
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 1.3e-08 63.2 51 62.7
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 1.3e-08 63.2 78 50.0
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.3e-08 63.2 34 79.4
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 1.7e-08 62.8 36 77.8
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.7e-08 62.8 56 53.6
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 2.2e-08 62.4 58 60.3
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 3.8e-08 61.6 54 50.0
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 5.0e-08 61.2 45 62.2
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 5.0e-08 61.2 71 49.3
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 5.0e-08 61.2 55 50.9
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 8.5e-08 60.5 86 39.5
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 8.5e-08 60.5 87 43.7
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 8.5e-08 60.5 55 56.4
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.1e-07 60.1 68 48.5
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 1.4e-07 59.7 81 40.7
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.4e-07 59.7 75 49.3
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.9e-07 59.3 69 46.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.9e-07 59.3 36 69.4
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 3.2e-07 58.5 46 52.2
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.2e-07 58.5 88 40.9
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 3.2e-07 58.5 46 63.0
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 5.5e-07 57.8 49 63.3
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.5e-07 57.8 71 45.1
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 1.2e-06 56.6 36 69.4
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 1.2e-06 56.6 29 82.8
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 1.6e-06 56.2 44 68.2
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 1.6e-06 56.2 30 80.0
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 1.6e-06 56.2 30 76.7
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.1e-06 55.8 76 48.7
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 2.7e-06 55.5 52 55.8
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 2.7e-06 55.5 52 55.8
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 2.7e-06 55.5 85 35.3
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.6e-06 55.1 41 63.4
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 4.6e-06 54.7 70 42.9
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 6.1e-06 54.3 47 55.3
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 6.1e-06 54.3 26 84.6
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 7.9e-06 53.9 69 42.0
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 7.9e-06 53.9 35 57.1
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 7.9e-06 53.9 42 57.1


User provided reference genes

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