Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 1.5e-103 380.9 374 100.0
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 2.4e-93 347.1 257 94.9
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 2.7e-60 237.3 257 68.9
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 6.6e-59 232.6 257 67.7
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 2.5e-58 230.7 257 68.5
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 5.8e-47 193.0 257 62.6
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 9.3e-45 185.7 257 67.7
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 6.7e-43 179.5 128 68.0
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 5.3e-40 169.9 121 66.9
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 5.3e-40 169.9 122 66.4
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 1.5e-39 168.3 128 63.3
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 3.4e-39 167.2 223 44.4
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 2.2e-38 164.5 131 63.4
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 9.3e-37 159.1 122 62.3
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 9.3e-37 159.1 132 62.1
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 2.7e-36 157.5 132 61.4
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 4.6e-36 156.8 116 67.2
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 4.6e-36 156.8 129 62.8
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 5.1e-35 153.3 108 68.5
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 1.0e-30 139.0 257 60.3
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 1.3e-30 138.7 223 67.3
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 2.2e-30 137.9 249 61.8
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 2.5e-29 134.4 230 55.2
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 1.3e-27 128.6 257 58.4
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 5.7e-26 123.2 257 58.4
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 2.2e-25 121.3 120 46.7
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 3.1e-24 117.5 80 63.8
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 4.1e-24 117.1 257 56.4
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 1.5e-23 115.2 79 68.4
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.5e-23 115.2 80 67.5
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 2.0e-23 114.8 81 65.4
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 2.0e-23 114.8 254 56.7
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 2.6e-23 114.4 79 64.6
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 1.3e-22 112.1 258 55.4
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 2.9e-22 110.9 257 55.3
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 5.0e-22 110.2 77 63.6
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.4e-21 108.6 83 65.1
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 6.1e-20 103.2 67 67.2
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 1.4e-19 102.1 79 63.3
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 3.0e-19 100.9 223 60.1
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.5e-18 98.6 67 67.2
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.5e-18 98.6 67 67.2
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 1.5e-18 98.6 81 55.6
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 2.0e-18 98.2 61 73.8
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 2.5e-18 97.8 80 56.2
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 2.5e-18 97.8 77 63.6
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 3.3e-18 97.4 75 62.7
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 4.3e-18 97.1 69 63.8
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 9.7e-18 95.9 58 72.4
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 6.3e-17 93.2 60 70.0
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 1.4e-16 92.0 60 71.7
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 1.4e-16 92.0 66 62.1
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 1.8e-16 91.7 256 53.1
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 2.4e-16 91.3 54 74.1
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 2.4e-16 91.3 54 74.1
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 3.1e-16 90.9 256 53.1
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.3e-16 90.1 63 63.5
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 9.1e-16 89.4 256 38.7
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 9.1e-16 89.4 256 52.7
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.2e-15 89.0 59 67.8
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 2.0e-15 88.2 256 52.7
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 2.0e-15 88.2 256 52.7
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 5.9e-15 86.7 58 67.2
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 1.0e-14 85.9 256 52.3
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 1.0e-14 85.9 59 66.1
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 1.3e-14 85.5 256 52.0
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 1.3e-14 85.5 256 52.0
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 1.7e-14 85.1 256 52.0
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.7e-14 85.1 72 56.9
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 2.2e-14 84.7 66 59.1
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 2.9e-14 84.3 256 52.0
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 5.0e-14 83.6 74 55.4
Oeu056704.1 Olea europaea HOM05D007686 ORTHO05D009709 5.0e-14 83.6 56 69.6
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 8.5e-14 82.8 255 52.2
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 1.9e-13 81.6 256 51.6
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 5.5e-13 80.1 66 60.6
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 2.7e-12 77.8 53 67.9
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 4.7e-12 77.0 257 51.0
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 4.7e-12 77.0 257 51.0
Ah.10g031010 Amaranthus hybridus HOM05D007686 ORTHO05D009709 2.3e-11 74.7 54 68.5
Peaxi162Scf00207g01213 Petunia axillaris HOM05D007686 ORTHO05D009709 3.0e-11 74.3 51 62.7
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 3.9e-11 73.9 61 59.0
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 5.1e-11 73.6 256 50.0
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 6.7e-11 73.2 256 50.8
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 1.1e-10 72.4 42 73.8
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 2.0e-10 71.6 79 41.8
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 1.3e-09 68.9 56 58.9
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 2.8e-09 67.8 47 66.0
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.8e-08 65.1 48 64.6
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 9.1e-08 62.8 53 54.7
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 1.5e-07 62.0 95 36.8
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.5e-07 62.0 46 60.9
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 4.5e-07 60.5 165 27.9
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 4.5e-07 60.5 44 56.8
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 5.9e-07 60.1 52 53.8
SEGI_18114 Sequoiadendron giganteum HOM05D007686 ORTHO05D009709 1.0e-06 59.3 59 45.8


User provided reference genes

Program Settings