Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 3.5e-26 120.9 65 100.0
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 5.1e-25 117.1 65 93.8
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 1.1e-22 109.4 65 90.8
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 3.1e-22 107.8 65 87.7
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 6.9e-22 106.7 65 86.2
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 1.5e-21 105.5 65 84.6
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 2.6e-21 104.8 65 84.6
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 2.6e-21 104.8 65 84.6
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 2.6e-21 104.8 65 83.1
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 5.8e-21 103.6 65 78.5
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 7.6e-21 103.2 60 86.7
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 7.6e-21 103.2 60 86.7
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 1.0e-20 102.8 58 89.7
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 1.0e-20 102.8 65 83.1
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 1.0e-20 102.8 65 83.1
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 1.3e-20 102.4 60 85.0
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.3e-20 102.4 65 80.0
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 1.7e-20 102.1 62 83.9
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 2.2e-20 101.7 65 83.1
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 2.9e-20 101.3 60 85.0
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 2.9e-20 101.3 65 81.5
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 3.8e-20 100.9 65 84.6
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 3.8e-20 100.9 65 81.5
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 3.8e-20 100.9 65 81.5
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 4.9e-20 100.5 65 81.5
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 6.5e-20 100.1 55 90.9
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 6.5e-20 100.1 55 90.9
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 6.5e-20 100.1 65 83.1
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 1.4e-19 99.0 60 83.3
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 1.4e-19 99.0 63 77.8
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.9e-19 98.6 60 83.3
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 1.9e-19 98.6 61 85.2
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 1.9e-19 98.6 63 79.4
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 4.2e-19 97.4 60 80.0
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 4.2e-19 97.4 60 80.0
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 4.2e-19 97.4 61 85.2
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 4.2e-19 97.4 65 80.0
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 5.5e-19 97.1 65 80.0
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 5.5e-19 97.1 60 78.3
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 5.5e-19 97.1 60 78.3
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 5.5e-19 97.1 65 80.0
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 7.1e-19 96.7 60 76.7
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 7.1e-19 96.7 65 80.0
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 9.3e-19 96.3 65 78.5
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 9.3e-19 96.3 65 78.5
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 9.3e-19 96.3 60 80.0
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 1.2e-18 95.9 58 81.0
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 1.6e-18 95.5 65 76.9
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 1.6e-18 95.5 65 76.9
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.6e-18 95.5 60 81.7
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 1.6e-18 95.5 59 81.4
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 2.1e-18 95.1 65 76.9
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 2.1e-18 95.1 65 76.9
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 75.4
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 2.1e-18 95.1 65 76.9
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 2.1e-18 95.1 62 75.8
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 2.1e-18 95.1 60 78.3
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 2.1e-18 95.1 58 82.8
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 2.7e-18 94.7 58 79.3
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 3.5e-18 94.4 60 78.3
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 4.6e-18 94.0 60 76.7
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 4.6e-18 94.0 65 73.8
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 6.0e-18 93.6 60 75.0
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 7.9e-18 93.2 60 76.7
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.0e-17 92.8 60 75.0
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 1.0e-17 92.8 58 81.0
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 1.3e-17 92.4 60 75.0
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 1.3e-17 92.4 61 77.0
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 1.8e-17 92.0 60 75.0
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 1.8e-17 92.0 60 75.0
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 2.3e-17 91.7 60 73.3
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 2.3e-17 91.7 60 76.7
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 3.9e-17 90.9 63 68.3
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 3.9e-17 90.9 65 75.4
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 3.3e-16 87.8 85 63.5
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 4.3e-16 87.4 58 72.4
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 5.7e-16 87.0 60 71.7
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 5.7e-16 87.0 65 66.2
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 9.6e-16 86.3 60 66.7
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 1.3e-15 85.9 60 68.3
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 1.8e-14 82.0 59 69.5
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 1.9e-11 72.0 35 91.4
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 4.2e-11 70.9 59 55.9
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 1.2e-10 69.3 36 83.3
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 1.0e-09 66.2 35 82.9
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 1.8e-09 65.5 49 65.3
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 1.1e-08 62.8 39 76.9
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 1.5e-08 62.4 62 59.7
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 4.3e-08 60.8 65 60.0
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 1.6e-07 58.9 36 80.6
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 6.3e-07 57.0 36 77.8
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 2.4e-06 55.1 35 68.6


User provided reference genes

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