Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1691.4 838 100.0
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1446.0 838 85.0
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1439.1 840 83.8
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1432.5 838 83.4
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1431.0 839 83.0
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1427.9 838 83.4
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1423.3 838 82.9
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1418.7 838 82.6
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1417.9 837 82.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1393.6 868 80.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1390.2 838 81.4
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1390.2 838 81.9
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1390.2 838 81.9
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1382.9 838 80.8
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1380.5 838 80.9
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1380.5 838 80.9
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1379.4 838 81.4
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1377.1 838 80.5
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1376.3 839 80.7
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1374.0 839 80.5
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1373.6 840 80.6
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1373.6 838 81.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1372.1 838 80.9
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1372.1 838 80.4
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1372.1 840 80.7
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1366.7 858 79.5
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1366.7 839 80.2
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1366.3 839 80.6
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 838 79.6
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1362.4 830 81.1
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1362.1 838 81.0
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1360.9 839 79.6
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1360.5 851 80.1
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1357.4 838 79.1
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1355.9 826 80.5
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1355.9 839 79.4
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1355.1 838 79.5
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1351.3 838 79.2
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 838 79.2
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1349.7 838 79.5
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1349.7 838 79.4
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 838 78.8
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1346.3 839 79.5
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1346.3 838 78.4
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1345.9 838 79.2
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1345.9 841 79.1
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1345.5 838 78.8
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 838 79.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 844 78.7
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1343.6 838 78.5
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1343.2 839 79.1
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 838 79.0
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1342.0 838 79.1
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1342.0 838 78.9
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1342.0 915 74.6
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 840 78.6
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1340.1 838 78.9
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1338.6 839 78.8
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1338.2 847 78.3
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 838 77.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 838 77.3
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 847 78.0
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1334.7 838 78.2
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1333.5 847 78.0
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 838 78.0
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 838 77.3
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1325.5 838 77.8
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1324.3 845 77.8
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1320.8 838 77.3
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 841 76.3
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 870 76.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 904 73.5
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 967 70.3
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1311.2 911 72.1
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1308.9 911 72.7
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1303.9 858 76.1
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1300.4 843 75.7
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1281.5 819 78.3
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1274.2 827 77.6
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1272.3 838 75.5
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1271.1 869 73.9
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1269.2 766 81.3
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1266.9 842 75.9
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1256.9 826 75.1
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1253.4 838 74.9
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1246.1 793 76.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1245.0 751 81.4
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1242.6 781 77.5
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1242.3 767 79.8
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1234.2 775 78.7
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1231.1 842 74.7
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1227.2 839 74.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1218.8 764 77.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1177.5 858 68.2
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1172.1 839 69.6
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1165.2 824 69.8
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1151.3 844 67.8
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 748 75.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1149.0 693 81.2
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1137.9 697 79.8
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1125.5 838 68.6
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1119.0 839 67.7
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1096.3 852 64.4
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1080.5 854 64.6
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 9.6e-310 1066.6 841 63.0
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.3e-301 1039.6 655 77.6
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 6.3e-277 957.6 845 61.5
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 5.4e-260 901.4 642 72.0
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 8.6e-242 840.9 542 76.4
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.1e-223 780.8 513 74.1
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 9.6e-209 731.1 418 86.1
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.9e-157 560.1 329 82.7
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 6.2e-123 446.0 300 77.7
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.4e-113 413.7 254 79.5
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-111 407.9 285 70.5
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.4e-105 387.1 307 63.5
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 2.1e-94 351.3 194 87.1
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.1e-90 339.0 263 65.8
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-87 328.2 388 50.3
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.1e-66 257.7 275 54.2
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 8.5e-64 249.6 182 69.8
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.1e-54 216.9 139 77.7
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.1e-46 191.8 140 65.0
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.4e-45 189.1 117 77.8
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 3.4e-36 157.9 94 81.9
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 9.8e-36 156.4 175 50.9
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 6.3e-35 153.7 83 85.5
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 7.3e-31 140.2 82 84.1
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.4e-27 127.1 76 77.6
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.5e-25 121.3 85 65.9
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 5.9e-25 120.6 73 79.5
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.1e-22 112.1 84 66.7
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 8.0e-22 110.2 67 80.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 5.0e-16 90.9 68 64.7
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.6e-14 85.9 105 50.5
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-09 69.7 42 83.3
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 6.0e-09 67.4 49 67.3
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 3.3e-07 61.6 41 68.3
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 2.1e-06 58.9 89 33.7


User provided reference genes

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