Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 0.0e+00 1226.8 616 100.0
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.5e-272 942.6 710 68.0
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 2.9e-271 938.3 709 66.0
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 1.7e-266 922.5 746 65.3
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.5e-264 916.0 705 66.0
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 2.0e-264 915.6 708 65.4
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 4.5e-264 914.4 710 64.8
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 3.6e-261 904.8 707 64.5
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.8e-260 902.5 735 62.6
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 4.0e-260 901.4 707 64.4
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 5.2e-260 901.0 713 65.8
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 6.7e-260 900.6 707 64.4
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 2.8e-258 895.2 711 65.3
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.1e-257 893.3 710 65.5
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 5.3e-257 891.0 773 59.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 6.5e-255 884.0 669 67.1
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 4.2e-254 881.3 712 62.9
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 5.5e-254 880.9 711 63.4
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.6e-253 879.4 710 63.7
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 4.0e-252 874.8 708 62.4
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 1.5e-251 872.8 713 63.5
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 9.4e-246 853.6 716 61.2
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.2e-245 853.2 707 62.1
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 8.8e-244 847.0 688 63.2
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.2e-243 846.7 673 65.7
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 1.5e-243 846.3 711 61.6
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 9.8e-243 843.6 664 63.6
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 9.8e-243 843.6 678 63.1
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 9.8e-243 843.6 705 60.3
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 3.7e-242 841.6 702 62.4
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 8.3e-242 840.5 681 62.1
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 1.4e-241 839.7 708 60.2
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.4e-241 839.7 705 60.3
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 2.4e-241 839.0 704 59.7
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 9.1e-241 837.0 686 62.2
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 3.5e-240 835.1 711 59.5
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.3e-239 833.2 645 65.0
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.3e-239 833.2 609 69.8
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 1.7e-239 832.8 706 59.6
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.7e-239 832.8 705 60.7
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 2.3e-239 832.4 711 59.1
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 2.9e-239 832.0 672 61.9
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 3.8e-239 831.6 700 59.7
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 5.0e-239 831.2 678 61.2
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 6.6e-239 830.9 711 59.1
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 1.9e-238 829.3 705 60.0
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 2.5e-238 828.9 712 58.8
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 3.3e-238 828.6 702 59.5
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 9.5e-238 827.0 711 59.2
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 9.5e-238 827.0 711 58.8
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 9.5e-238 827.0 711 58.8
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 2.1e-237 825.9 667 63.0
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 4.7e-237 824.7 679 60.8
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 6.1e-237 824.3 711 59.1
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 8.0e-237 823.9 711 58.4
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 8.0e-237 823.9 677 61.4
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.4e-236 823.2 688 61.6
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 3.0e-236 822.0 706 59.5
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 3.0e-236 822.0 705 59.3
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 1.2e-235 820.1 734 57.8
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 5.7e-235 817.8 707 60.4
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 9.8e-235 817.0 681 60.9
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.3e-234 816.6 711 58.6
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 2.2e-234 815.8 756 57.7
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 2.9e-234 815.5 711 58.5
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 6.4e-234 814.3 676 60.8
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 8.3e-234 813.9 712 57.7
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.8e-233 812.8 675 61.0
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 4.1e-233 811.6 713 58.8
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 3.5e-232 808.5 652 62.3
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 9.5e-230 800.4 707 57.9
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 9.8e-227 790.4 708 58.1
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 8.3e-226 787.3 705 57.6
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 4.1e-225 785.0 716 57.0
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.7e-224 782.3 716 56.8
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 2.4e-217 759.2 688 58.1
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 4.1e-217 758.4 645 59.7
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 4.6e-216 755.0 702 55.8
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.3e-212 742.7 711 55.1
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.7e-208 729.2 472 74.4
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.4e-204 716.8 726 53.6
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.8e-204 716.5 669 53.8
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 7.1e-201 704.5 676 54.7
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 7.8e-200 701.0 684 53.7
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.8e-196 689.9 975 42.5
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.7e-194 683.3 613 59.1
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 1.9e-193 679.9 537 62.2
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 4.2e-193 678.7 639 57.9
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.9e-190 669.8 472 67.4
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 3.3e-190 669.1 632 54.1
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 4.3e-190 668.7 614 57.8
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.4e-185 652.9 528 65.2
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 3.2e-185 652.5 525 63.6
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 3.5e-184 649.0 624 55.3
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 8.7e-175 617.8 543 59.7
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.2e-171 607.4 484 61.6
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 4.5e-155 552.4 663 43.7
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.0e-154 551.2 682 43.7
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.4e-140 504.2 428 59.8
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 5.7e-134 482.3 393 62.1
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 3.2e-129 466.5 482 48.5
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 2.3e-119 433.7 440 50.2
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 8.9e-119 431.8 327 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 2.0e-115 420.6 439 48.5
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.1e-111 406.8 386 58.0
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 9.8e-110 401.7 375 54.4
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.3e-105 386.7 275 68.7
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 3.2e-92 343.6 352 50.3
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 1.2e-83 315.1 384 46.6
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 1.5e-81 308.1 621 34.8
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 2.1e-75 287.7 429 40.1
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.9e-74 283.5 284 54.2
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.3e-71 273.1 316 46.2
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 4.8e-64 250.0 650 31.1
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 6.9e-63 246.1 285 46.3
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 4.9e-61 240.0 351 40.2
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 1.3e-56 225.3 171 68.4
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.4e-55 221.9 325 42.8
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.9e-49 201.4 390 33.8
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-49 199.5 389 31.4
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 2.8e-48 197.6 284 40.8
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.3e-48 196.4 121 75.2
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.0e-46 191.4 129 69.0
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.1e-44 185.7 355 39.2
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.4e-44 185.3 126 69.8
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 7.9e-43 179.5 113 77.9
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 9.4e-36 156.0 117 69.2
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 2.1e-35 154.8 103 74.8
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.2e-27 129.0 85 67.1
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 2.2e-21 108.2 79 62.0
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.4e-17 94.0 129 42.6
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 9.8e-17 92.8 127 44.1
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 9.8e-17 92.8 116 46.6
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.3e-16 89.7 123 43.1
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.4e-15 89.0 112 41.1
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.4e-15 89.0 126 42.9
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 2.4e-15 88.2 60 75.0
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.1e-15 86.3 46 82.6
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.2e-14 85.9 90 46.7
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 8.6e-13 79.7 46 76.1
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 3.6e-11 74.3 68 48.5
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 8.0e-11 73.2 95 42.1
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.2e-09 69.3 104 37.5
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 3.7e-08 64.3 53 66.0
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 4.9e-08 63.9 45 68.9
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 4.1e-07 60.8 53 62.3


User provided reference genes

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