Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 5.1e-111 404.4 208 100.0
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.8e-108 396.0 208 97.1
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 5.3e-108 394.4 208 96.2
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 5.3e-108 394.4 208 95.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.2e-107 393.3 208 96.2
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.2e-107 393.3 208 96.2
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.0e-107 392.5 208 95.2
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.0e-107 392.5 208 95.7
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 95.2
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 3.4e-107 391.7 208 95.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.4e-107 391.7 208 95.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 95.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.9e-107 391.0 208 95.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 95.2
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 95.2
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 94.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.0e-106 390.2 208 94.7
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.3e-106 389.8 206 95.1
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.3e-106 389.8 206 95.1
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 94.2
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 94.7
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.2
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 5.0e-106 387.9 207 94.2
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 94.7
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.8
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 93.3
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.4e-105 386.3 208 94.2
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 93.8
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 93.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 4.2e-105 384.8 206 94.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 93.3
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 93.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 4.2e-105 384.8 213 93.0
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 93.8
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 91.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 93.3
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 2.1e-104 382.5 207 93.2
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 93.3
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.7e-104 382.1 207 92.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 92.7
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 93.2
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 7.9e-104 380.6 207 91.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 91.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 92.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 90.9
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 91.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 91.8
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 3.9e-103 378.3 206 92.2
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 5.1e-103 377.9 208 91.8
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 90.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 8.8e-103 377.1 210 91.4
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 92.2
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 90.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.5e-102 376.3 207 92.8
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 89.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 88.9
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.3e-101 373.2 207 90.3
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 90.4
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 90.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 91.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.2e-101 372.5 208 89.9
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.7e-101 371.7 208 90.9
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 89.9
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 90.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 6.3e-101 370.9 218 87.2
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 90.4
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 90.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 90.4
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 8.2e-101 370.5 203 91.6
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 8.2e-101 370.5 206 88.8
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 89.4
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 90.4
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 90.4
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.8e-100 369.4 207 89.4
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 89.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 209 90.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.1e-100 368.6 209 89.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.1e-100 368.6 209 89.5
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 6.9e-100 367.5 208 89.4
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 89.4
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 89.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 205 90.2
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.5
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.2e-99 366.7 207 88.9
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 91.3
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.5e-99 364.8 205 89.8
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 5.9e-99 364.4 208 88.5
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.3e-98 363.2 207 90.8
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.4e-97 359.8 196 92.9
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 84.6
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 84.1
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 9.4e-97 357.1 208 85.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.7e-96 354.8 207 87.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.7e-96 354.8 207 87.4
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-95 352.8 207 87.0
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 6.7e-95 350.9 208 86.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 8.8e-95 350.5 208 86.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.7e-93 346.3 207 85.0
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.7e-93 346.3 208 87.5
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.4e-92 343.2 178 96.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.4e-92 343.2 178 96.1
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 3.4e-91 338.6 179 94.4
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 1.0e-90 337.0 178 94.9
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.8e-90 335.1 206 85.9
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.4e-87 326.6 177 91.0
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 8.8e-87 323.9 208 75.5
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.6e-86 322.4 210 83.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 5.7e-86 321.2 179 88.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.7e-85 319.7 190 85.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-84 317.0 208 81.2
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 4.4e-78 295.0 156 94.2
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 7.5e-78 294.3 167 86.8
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 1.7e-77 293.1 205 75.1
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.7e-77 292.0 207 75.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.1e-76 288.5 156 92.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.7e-69 266.5 211 70.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.2e-67 260.4 202 62.9
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.0e-66 257.3 203 62.1
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.3e-66 256.1 206 67.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 4.2e-65 251.9 200 60.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.8e-63 246.5 197 61.4
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 6.8e-63 244.6 162 80.2
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.3e-58 230.3 206 53.4
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.3e-58 229.6 133 91.0
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.6e-58 227.6 120 93.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 6.4e-53 211.5 207 52.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-51 206.8 151 73.5
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 2.7e-51 206.1 148 72.3
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 6.0e-51 204.9 207 52.7
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.5e-49 200.3 209 56.9
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.6e-48 196.8 198 47.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.4e-46 188.7 196 45.9
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.3e-42 176.4 160 64.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.9e-42 175.6 231 43.3
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 4.7e-40 168.7 208 50.0
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-39 167.2 98 83.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.5e-33 147.1 206 46.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 6.2e-32 141.7 96 79.2
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 6.2e-32 141.7 187 39.0
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 2.4e-31 139.8 99 73.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.3e-29 134.0 74 89.2
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.2e-28 129.4 83 77.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 9.2e-28 127.9 92 71.7
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 7.8e-27 124.8 135 55.6
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 9.6e-25 117.9 60 88.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.5e-22 110.5 82 68.3
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 4.4e-22 109.0 73 78.1
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 6.4e-21 105.1 60 86.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 1.1e-12 77.8 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.0e-10 71.2 62 67.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.8e-08 63.2 39 74.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 4.0e-07 59.3 58 65.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 4.0e-07 59.3 38 71.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 9.9e-06 54.7 137 24.8


User provided reference genes

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