Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 0.0e+00 1754.6 897 100.0
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.9e-301 1038.1 943 59.8
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 3.8e-280 968.4 902 56.8
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 7.0e-274 947.6 899 58.6
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.7e-273 945.7 909 55.8
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 2.9e-272 942.2 881 56.1
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 4.2e-271 938.3 917 56.5
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 1.4e-269 933.3 897 56.7
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 4.5e-265 918.3 1011 50.4
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.5e-260 903.3 947 52.5
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.9e-258 896.3 938 52.1
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 9.5e-255 884.0 947 52.1
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.4e-252 875.5 879 54.6
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 2.4e-250 869.4 889 52.5
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.6e-246 856.7 782 58.4
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 2.3e-245 852.8 1019 51.5
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 3.6e-238 828.9 904 50.6
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.5e-236 823.5 889 49.9
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.9e-235 819.3 898 51.2
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.1e-231 807.4 1031 46.0
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 7.3e-231 804.7 1048 44.8
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 2.0e-228 796.6 991 49.4
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 9.9e-228 794.3 1078 46.4
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 3.9e-224 782.3 896 48.3
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.1e-223 780.8 965 50.8
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.3e-222 777.3 1041 44.7
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 8.1e-222 774.6 911 47.9
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 4.5e-220 768.8 888 50.1
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 9.9e-220 767.7 899 49.5
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 2.7e-217 759.6 893 49.4
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 3.5e-217 759.2 904 48.7
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 1.3e-216 757.3 900 48.2
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 3.3e-215 752.7 906 50.6
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 5.6e-215 751.9 903 48.2
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 7.4e-215 751.5 941 46.1
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 3.7e-214 749.2 890 48.8
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 6.2e-214 748.4 897 47.5
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 8.1e-214 748.0 893 48.4
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 8.1e-214 748.0 893 48.4
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 5.3e-213 745.3 1028 46.7
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.2e-212 744.2 739 55.6
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 2.0e-212 743.4 868 48.6
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 3.4e-212 742.7 892 48.9
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 5.8e-212 741.9 899 47.9
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 5.8e-212 741.9 899 49.4
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.0e-211 741.1 891 47.9
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.3e-211 740.7 940 46.0
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 3.2e-210 736.1 970 44.0
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 9.3e-210 734.6 897 46.6
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 3.5e-209 732.6 940 46.0
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.8e-208 730.3 992 44.3
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 6.7e-208 728.4 1090 40.6
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 7.4e-207 724.9 924 45.3
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.4e-205 720.7 1019 43.0
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.1e-205 719.5 892 47.6
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.1e-205 719.5 968 43.6
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 3.1e-205 719.5 968 43.6
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 4.9e-203 712.2 928 46.2
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 2.5e-202 709.9 954 43.7
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 2.5e-202 709.9 1029 42.0
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 4.2e-202 709.1 897 47.4
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-201 707.6 953 43.8
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.0e-200 704.5 944 44.0
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.5e-199 700.7 1064 40.1
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 5.3e-197 692.2 946 46.2
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 6.9e-197 691.8 906 45.8
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.2e-196 691.0 1023 45.7
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 5.9e-196 688.7 1058 40.6
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.3e-195 687.6 1066 40.9
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 5.0e-195 685.6 1074 38.7
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 6.1e-193 678.7 912 44.6
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.2e-190 670.2 903 44.4
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 3.7e-190 669.5 630 58.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.4e-189 667.5 1017 41.2
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 3.1e-189 666.4 933 43.3
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 5.3e-189 665.6 1090 38.3
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 7.7e-188 661.8 905 45.6
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 1.7e-187 660.6 1039 42.1
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 5.0e-187 659.1 944 44.5
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 8.5e-187 658.3 877 45.8
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 1.1e-186 657.9 1143 37.0
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 7.9e-185 651.7 984 39.4
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.0e-184 651.4 924 42.4
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-183 647.9 1081 42.7
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.1e-183 647.9 876 43.5
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.5e-183 647.5 786 48.3
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.6e-183 646.7 781 48.5
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.6e-180 636.7 1049 40.1
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 6.5e-179 632.1 637 56.2
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.2e-178 629.8 802 45.8
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 9.4e-178 628.2 1017 37.9
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 1.4e-176 624.4 674 53.6
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 1.8e-176 624.0 905 42.7
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 3.9e-176 622.9 944 43.9
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 3.5e-172 609.8 873 44.1
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 2.1e-169 600.5 1075 37.7
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 6.8e-168 595.5 897 40.8
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 7.5e-167 592.0 641 50.7
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.4e-165 587.8 675 49.5
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.7e-158 564.3 881 41.9
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 3.1e-157 560.1 1029 38.3
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-154 551.2 802 42.3
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.3e-142 511.5 946 39.0
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 6.4e-142 509.2 1182 30.9
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-133 481.9 886 33.0
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 3.7e-126 456.8 878 35.3
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.6e-121 440.3 801 37.3
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.2e-119 435.3 377 57.6
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 3.0e-115 420.6 506 44.1
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 4.6e-108 396.7 321 62.3
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 3.0e-99 367.5 840 31.3
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.5e-98 364.4 457 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.2e-95 355.5 920 30.8
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 2.9e-94 350.9 850 30.1
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 5.3e-88 330.1 545 39.8
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.2e-76 292.4 292 52.4
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.8e-67 259.6 597 32.3
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 3.7e-65 254.2 409 46.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 4.5e-63 247.3 299 55.9
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 3.8e-62 244.2 308 48.4
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 8.0e-60 236.5 397 39.3
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.0e-59 234.6 213 55.9
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.1e-56 226.1 220 54.1
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 5.2e-51 207.2 303 43.2
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 5.4e-48 197.2 688 26.5
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.5e-46 190.3 403 30.0
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.8e-43 179.9 207 48.3
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 2.2e-41 175.3 237 40.9
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 6.3e-41 173.7 182 42.3
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.7e-39 166.8 256 41.4
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 7.7e-39 166.8 212 47.2
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.3e-38 166.0 133 59.4
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.7e-38 165.6 210 44.3
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.6e-36 159.1 244 40.2
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.0e-36 156.8 353 34.0
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.8e-35 153.7 287 35.5
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.1e-32 146.4 538 31.8
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 5.2e-27 127.5 117 56.4
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 2.6e-26 125.2 213 39.4
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 9.8e-26 123.2 215 40.0
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.9e-24 119.0 113 53.1
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-21 109.8 188 36.2
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 8.9e-19 100.1 147 42.2
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 5.8e-18 97.4 94 52.1
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 3.9e-14 84.7 320 27.5
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.5e-13 82.8 194 30.4
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.1e-12 79.0 91 41.8
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 1.4e-11 76.3 181 33.7
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 3.8e-09 68.2 51 56.9


User provided reference genes

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